Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M03
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032626-13|CAA21532.1| 174|Caenorhabditis elegans Hypothetical... 88 2e-18
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 1.6
U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical pr... 27 2.9
AC025721-12|AAK29899.1| 278|Caenorhabditis elegans Hypothetical... 27 5.0
U46671-2|AAA85748.1| 205|Caenorhabditis elegans Hypothetical pr... 26 6.6
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 26 6.6
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 26 6.6
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 26 6.6
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 26 6.6
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 26 6.6
AL032644-2|CAA21667.1| 199|Caenorhabditis elegans Hypothetical ... 26 8.7
>AL032626-13|CAA21532.1| 174|Caenorhabditis elegans Hypothetical
protein Y37D8A.14 protein.
Length = 174
Score = 87.8 bits (208), Expect = 2e-18
Identities = 37/79 (46%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Frame = +3
Query: 123 GHGGPVESD---EEFDSRYEAFFNRKDIDAWEILXGMNDLCGMDLVPDPKIIKSALHACR 293
GHG + ++FD+ + + NR +ID WE+ +++L D++PDPK++++AL ACR
Sbjct: 30 GHGDDIMEKWPADKFDNHFINYLNRPEIDGWEVRKALSELHDYDVIPDPKVVEAALRACR 89
Query: 294 RVNDYALAVRFIEACKDKC 350
RVND+ALAVRF+EA K KC
Sbjct: 90 RVNDFALAVRFLEAIKIKC 108
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 28.3 bits (60), Expect = 1.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 59 PCPEKVFGPSSDGKRCSFC 115
PCPE FGP++ ++C C
Sbjct: 2642 PCPEGTFGPTTGLRKCICC 2660
>U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical
protein F28A12.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = -2
Query: 263 FWVRY-QVHATKVVHPXKNFPGINVFSVEEGFISAIE---FFIRLDWAAVSPSYRNY 105
F+ Y QV AT +++ G+N +S E +F ++ W AVS R Y
Sbjct: 447 FYTSYSQVKATTILNTFNKIFGLNGLWFGMSVVSLTELILYFTKISWIAVSSKRRQY 503
>AC025721-12|AAK29899.1| 278|Caenorhabditis elegans Hypothetical
protein Y48G8AL.13 protein.
Length = 278
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 195 CLFC*RRLHICYRILHQTRLGRRVPFLQKL 106
CLF R L +CY + + +VP L KL
Sbjct: 175 CLFLFRHLPVCYLLFYLIAQDVKVPILLKL 204
>U46671-2|AAA85748.1| 205|Caenorhabditis elegans Hypothetical
protein C14E2.3 protein.
Length = 205
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 72 FSGHGPMHQKPTSAFCSSCRI 10
F G H +P A C SCRI
Sbjct: 2 FFFQGQCHSQPNPAICESCRI 22
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 75 TFSGHGPMHQKPTSAFCSSCRIL 7
T+ G P+ Q+P + C+S R+L
Sbjct: 936 TYEGERPLAQQPNTIACASLRVL 958
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 75 TFSGHGPMHQKPTSAFCSSCRIL 7
T+ G P+ Q+P + C+S R+L
Sbjct: 694 TYEGERPLAQQPNTIACASLRVL 716
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 75 TFSGHGPMHQKPTSAFCSSCRIL 7
T+ G P+ Q+P + C+S R+L
Sbjct: 630 TYEGERPLAQQPNTIACASLRVL 652
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform c protein.
Length = 1036
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 75 TFSGHGPMHQKPTSAFCSSCRIL 7
T+ G P+ Q+P + C+S R+L
Sbjct: 859 TYEGERPLAQQPNTIACASLRVL 881
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform a protein.
Length = 1113
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 75 TFSGHGPMHQKPTSAFCSSCRIL 7
T+ G P+ Q+P + C+S R+L
Sbjct: 936 TYEGERPLAQQPNTIACASLRVL 958
>AL032644-2|CAA21667.1| 199|Caenorhabditis elegans Hypothetical
protein Y51H1A.3a protein.
Length = 199
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 108 LQRLPSLLGPKTFSGHGPMHQKPTS 34
L R+ S+ GP TF G P KP++
Sbjct: 18 LARIMSMRGPLTFDGWYPRDHKPSA 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,446,249
Number of Sequences: 27780
Number of extensions: 164362
Number of successful extensions: 413
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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