Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_M02
(221 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 1.8
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 25 1.8
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc... 24 3.1
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 23 4.1
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 23 5.5
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 23 7.2
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 23 7.2
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz... 23 7.2
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 23 7.2
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 23 7.2
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 22 9.5
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 22 9.5
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 37 FIFPNRMCGLC*MSRVYRTEYYYHG 111
FIFP+ CGL + YR Y+Y G
Sbjct: 214 FIFPSLFCGL--LWGDYRGGYFYAG 236
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 218 HSFCQFHRGVRHLS*DVTTSETNCCHTK 135
HSF H V+ + +SE N C +K
Sbjct: 361 HSFIHVHENVKDEDIETYSSEVNSCFSK 388
>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 230
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 150 LLPYQDQPELLSFAMVIILRSVHTTHL 70
L PY D P+ + + + I +H T L
Sbjct: 43 LSPYMDSPQSIGYGVTISAPHMHATAL 69
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 23.4 bits (48), Expect = 4.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 60 RIMLDESCVQNGVLLPWRSSIILAG-LGMAAVGFAGRYVLRQMPNASVKL 206
+I+L+ G++L S AG LGM A+G G + M N +L
Sbjct: 175 QIVLENYAAPGGMMLGTDSHTPNAGGLGMIAIGVGGADAVDAMTNTPWEL 224
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 68 HNPHILFGKMKFTLYFLITT 9
H P +G +FT YF+ TT
Sbjct: 32 HYPWTFYGMDEFTEYFMSTT 51
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 163 PAKPTAAIPRPARIIELRHGNNTPFCTHDSSNII 62
P+KP +++ I + NN PF ++ S I+
Sbjct: 265 PSKPLSSVYGSELINQAGDDNNKPFHKYEESAIV 298
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 22.6 bits (46), Expect = 7.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 60 RIMLDESCVQNGVLLPWRSSIILAG-LGMAAVGFAGRYVLRQMPN 191
+I+L+ G+L+ S AG LGM A+G G + M N
Sbjct: 171 QIVLENYAFPGGLLIGTDSHTPNAGGLGMVAIGVGGADAVDVMAN 215
>SPAC824.06 |tim14||TIM23 translocase complex subunit
Tim14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 114 SSIILAGLGMAAVGFAGR 167
SS IL G+G+AA AG+
Sbjct: 2 SSAILLGVGIAATAAAGK 19
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +3
Query: 66 MLDESCVQNGVLLPWRSSIILAGLGMAAVGFAGRYVLRQMPNASVKLAEA 215
+L +SC ++ +L+ +I +G A F QMP + + ++
Sbjct: 98 LLTQSCTRDTILIAMGGGVIGDLVGYVAASFMRGIRFIQMPTTLLAMVDS 147
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 162 QRNQLLPYQDQPELLSFAMVIILRSVHTTHL 70
+ N+ LPY + ++IL +H TH+
Sbjct: 107 RNNERLPYLCNAIWSFYTTIVILAVLHVTHV 137
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 153 GFAGRYVLRQMPNASVKLA 209
GF+GRY+ + N + KLA
Sbjct: 605 GFSGRYLTSGLVNMAEKLA 623
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -1
Query: 185 HLS*DVTTSETNCCHTKTSQNY*ASPW 105
HL + + +CCH +T + + +SP+
Sbjct: 14 HLKAIIEEPKLSCCHCETCRIWCSSPF 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 885,128
Number of Sequences: 5004
Number of extensions: 13769
Number of successful extensions: 39
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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