Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M02
         (221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0233 + 1801011-1802081                                           29   0.51 
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062...    27   2.7  
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770...    26   3.6  
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348...    26   3.6  
01_01_0950 - 7460351-7460392,7460869-7461094,7461352-7461672,746...    25   6.2  
04_04_1548 - 34313212-34313304,34313518-34313632,34314097-343142...    25   8.3  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    25   8.3  

>11_01_0233 + 1801011-1802081
          Length = 356

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 199 TEALGICLRT*RPAKPTAAIPRPARIIE-LRHGNNTPFC-THDSSNIIRTFYS 47
           T A G+ +R   PA+P AA PRP R    L H +   FC +  S  +   FY+
Sbjct: 63  TTARGVDVRLYLPAEPPAAAPRPRRRRPLLLHLHGGGFCLSRPSWALYHNFYA 115


>07_03_0572 -
           19604643-19604745,19604947-19605629,19605786-19606284,
           19606370-19606878,19607110-19607148,19607347-19607411,
           19609081-19609201,19610229-19610315,19611096-19611179,
           19611925-19612175,19612869-19612962,19613043-19613284,
           19614187-19614505
          Length = 1031

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 136 RPARIIELRHGNNTPFCTHDS-SNIIRTFYSGK 41
           R A +  LRHG+N P   ++    I++++Y G+
Sbjct: 747 RTAAMALLRHGSNMPLKRYEELMQIVKSYYGGR 779


>06_03_1122 -
           27775141-27775333,27775414-27775604,27775907-27777099,
           27777206-27777353,27777534-27777609,27777696-27777818,
           27777886-27778050,27778169-27778259,27778580-27778664,
           27778745-27778900,27778992-27779048,27779138-27779236,
           27779381-27779499,27780145-27780202
          Length = 917

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 168 NDQRNQLLPYQ--DQPELLSFAMVIILRSVHTTHLT*SAHSIRENEIYTIFSNNNPRA 1
           ND    LL  +  ++P+ +  + V+   S+H   L  +AH+   N  +TIF   NPRA
Sbjct: 223 NDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIF--YNPRA 278


>02_01_0485 +
           3487578-3487635,3488281-3488399,3488600-3488698,
           3488795-3488851,3488954-3489109,3489227-3489311,
           3489489-3489579,3489693-3489857,3489923-3490045,
           3490244-3490319,3490486-3490633,3490769-3491934,
           3492041-3492231,3492321-3492513
          Length = 908

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 168 NDQRNQLLPYQ--DQPELLSFAMVIILRSVHTTHLT*SAHSIRENEIYTIFSNNNPRA 1
           ND    LL  +  ++P+ +  + V+   S+H   L  +AH+   N  +TIF   NPRA
Sbjct: 223 NDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIF--YNPRA 278


>01_01_0950 -
           7460351-7460392,7460869-7461094,7461352-7461672,
           7461750-7461941,7462054-7462262
          Length = 329

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 129 PELLSFAMVII-LRSVHTTHLT*SAHSIRENEIYTIFS 19
           P  L FA+ +I L   + + LT   H +RE   Y++FS
Sbjct: 163 PGFLGFAVNMIHLDQANLSCLTAGGHGLRETLFYSLFS 200


>04_04_1548 -
           34313212-34313304,34313518-34313632,34314097-34314287,
           34314391-34315379,34315989-34316136,34316349-34316424,
           34316946-34317110,34317196-34317286,34318069-34318153,
           34318256-34318411,34318479-34318586,34318713-34318811,
           34318927-34319036,34319139-34319208
          Length = 831

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 165 DQRNQLL---PYQDQPELLSFAMVIILRSVHTTHLT*SAHSIRENEIYTIFSN 16
           +++NQLL       +P+ +  + V+   S+H   L  +AH+   N  +TIF N
Sbjct: 241 NEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYN 293


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 78  SCVQNGVLLPWRSSIILA 131
           SCVQNG L  +R+S++L+
Sbjct: 368 SCVQNGNLFFFRASVLLS 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,445,906
Number of Sequences: 37544
Number of extensions: 83733
Number of successful extensions: 201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)