Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M02
         (221 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   5.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   7.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        19   9.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   9.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 221 LHSFCQFHRGVRHLS*DVTTSETN 150
           +H F ++  G  + S D++ SET+
Sbjct: 297 VHYFTKYGSGECYFSSDLSESETS 320


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.0 bits (37), Expect = 7.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 174 GRNDQRNQLLP 142
           G+N+Q+N L+P
Sbjct: 185 GKNNQQNILIP 195


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +3

Query: 75  ESCVQNGVLLPWRSSIILAGLGMAAVGFAGRY 170
           ++C  +       SS+  A +  AAV +A ++
Sbjct: 28  QACTTSPATASLESSLSAAAVAAAAVNYAQQH 59


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 191 VRHLS*DVTTSETN 150
           +RHL  +V++ ETN
Sbjct: 639 MRHLKEEVSSIETN 652


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,129
Number of Sequences: 438
Number of extensions: 846
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)