Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_M01
         (271 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.6  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    20   4.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   6.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   6.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    19   8.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 226 NNNGVVHKDSHLVEFGPDHLAGSAPSRH 143
           +++G+ H         PDH    +PS H
Sbjct: 27  DSSGIPHSAESSASNSPDHYERFSPSTH 54


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 128  RACRPPPTAWSSSHRSH 78
            R C PPP   S+   SH
Sbjct: 1699 RRCPPPPRMGSAEGLSH 1715


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 186 STRWLSLCTTPLLFLSVDVDECE 254
           +TR+LS+C    L LS+ + E +
Sbjct: 29  TTRYLSVCERLNLALSLSLTETQ 51


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 9/29 (31%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
 Frame = -2

Query: 150 VAMKSITTSL---SPASDSMVFKSSKSLM 73
           +A+  +T +L   SP+S+++ + +++SLM
Sbjct: 255 MALSPVTHNLYYNSPSSENLYYVNTESLM 283


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 89  DLKTMLSEAGDKLV 130
           DLK M  EAG  LV
Sbjct: 187 DLKHMKQEAGSNLV 200


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 226 NNNGVVHKD 200
           ++NGVVH+D
Sbjct: 26  HHNGVVHRD 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,516
Number of Sequences: 438
Number of extensions: 1400
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)