Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L24
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 28 0.59
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 1.4
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 4.2
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 5.5
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 24 7.3
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 24 7.3
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 24 9.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 9.7
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 24 9.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 24 9.7
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.9 bits (59), Expect = 0.59
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +2
Query: 80 TPPRETIQKQIQQD-WVNREYIEVITGS 160
TP RE ++Q +D W + EY EV+ GS
Sbjct: 121 TPKREIARRQRDEDEWESDEYEEVVDGS 148
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 1.4
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 92 ETIQKQIQQDWVNREYIEVITGS----IKKITDFLNSFDMSCRSSLATLNEKLTSLE 250
+T+ + I+ +++ + I G IK + + ++S D LA +NEK+ SLE
Sbjct: 402 QTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSLDTERADLLAKINEKIESLE 458
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.0 bits (52), Expect = 4.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 131 REYIEVITGSIKKITDFLNSFDMSCR-SSLATLNEKLTSLERKIDYL 268
RE E+I +++K+ +LNSF + S ++ + E+K +L
Sbjct: 590 RERQEIIIQNVEKLKSYLNSFKVQAECSEISKILSFSQETEKKYKFL 636
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 95 TIQKQIQQDWVNREYIEVITGSIKKITDFL-NSFDMS 202
+I Q W+ + Y + GSI+K + ++F++S
Sbjct: 992 SIDPDNSQAWLGKAYCSIAVGSIRKAVQIIHHAFEIS 1028
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 258 IFLSNEVNFSFNVARLDLQDISKEFRKSVI 169
+FL NE+ F V + LQ+I K R+ ++
Sbjct: 555 LFLQNELRFEKFVRQQHLQNIGKLHREHIL 584
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 302 MLEFLLLSHMLPNNQFSF 249
MLE L LSH+ P +F F
Sbjct: 260 MLEALFLSHVFPRYRFCF 277
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 23.8 bits (49), Expect = 9.7
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 83 PPRETIQKQIQQDWVNREYIEVITGSIKKITDFLNSFDMSCRSSLATLN 229
PP+ ++ +++ N E I V + S+ +TD NS SC +SL L+
Sbjct: 554 PPQASLVGRLRTICRN-ENIAVDSRSLTLLTDIYNSDIRSCINSLQLLS 601
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 140 IEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLE 250
+E +T S + + D+L++ L +LN+KL E
Sbjct: 710 MESVTTSKESLADYLSNLKERHNDELDSLNKKLREFE 746
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = -1
Query: 225 NVARLDLQDISKEFRKSVIFFILPVMTSIYSLFTQSCC 112
N ++ I++ F + ++ I+P + S ++ SCC
Sbjct: 274 NKFQIPSSSINRFFVQGIVKRIIPAVASTNAIIAASCC 311
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 92 ETIQKQIQQDWVNREYIEVI 151
E I K I DW+N +EVI
Sbjct: 355 EIIAKNILGDWINYGLVEVI 374
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,952
Number of Sequences: 5004
Number of extensions: 23634
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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