Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L24
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1322 - 35698314-35698322,35698537-35698619,35699685-35699823     59   1e-09
04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302     33   0.082
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931...    27   4.1  
08_02_0415 + 16898549-16898644,16899406-16899678,16899916-168999...    27   4.1  
05_07_0099 - 27675917-27676032,27676137-27676260                       27   4.1  
05_03_0498 - 14720989-14722119,14722225-14722839                       27   5.4  
01_05_0016 + 17177812-17178084,17178358-17178480,17178526-171788...    27   7.1  
02_03_0097 + 15166077-15166349,15166623-15166694,15166715-151671...    26   9.4  

>02_05_1322 - 35698314-35698322,35698537-35698619,35699685-35699823
          Length = 76

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 26/54 (48%), Positives = 40/54 (74%)
 Frame = +2

Query: 110 IQQDWVNREYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLERKIDYLE 271
           +Q DW NRE+I  I+ +++++ DFL  F+ + +S LA+LNEKL  LERK++ LE
Sbjct: 19  VQADWENREFISNISLNVRRLFDFLLRFEATTKSKLASLNEKLDILERKLEVLE 72


>04_03_0270 - 13675169-13675334,13676902-13676984,13677057-13677302
          Length = 164

 Score = 33.1 bits (72), Expect = 0.082
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 161 IKKITDFLNSFDMSCRSSLATLNEKLTSLERKIDYLEA 274
           I    +FLNSF   C   L+ L+ K+  L+  ++ LEA
Sbjct: 87  IANTVEFLNSFAAQCNDKLSLLHRKIVKLDSSLNLLEA 124


>10_06_0154 -
           11291630-11292106,11292192-11292457,11293027-11293131,
           11293210-11293234,11293349-11293465,11293528-11294041,
           11295524-11295578,11295980-11296060,11296129-11296219,
           11296321-11296417,11297465-11297529,11297950-11298108,
           11298208-11298455,11300667-11300835
          Length = 822

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 89  RETIQKQIQQDWVNREYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLERKIDYL 268
           R+ I K  ++ W     +E     I+ +TDF N +  S R S+ T      +L    +YL
Sbjct: 271 RQKINKGKKRIWKMEGKLE--KAQIQHLTDFNNKYGPSIRQSVETAEHNNCALRCLNNYL 328

Query: 269 EACV 280
           E  +
Sbjct: 329 ELMI 332


>08_02_0415 +
           16898549-16898644,16899406-16899678,16899916-16899996,
           16900094-16900369,16900414-16900932
          Length = 414

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 97  HTETNTARLGK*RVYRSHNGEYKKDN*FPKLFRY 198
           HT     RLG+ R YRSH     +D  F K   Y
Sbjct: 328 HTHPMVKRLGRRRYYRSHRHISNEDYEFLKTLHY 361


>05_07_0099 - 27675917-27676032,27676137-27676260
          Length = 79

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 170 ITDFLNSFDMSCRSSLATLNEKLTSLERKIDYLEACVTK 286
           I+   +  D + R  L  +NE+L  LE +++ LEA V K
Sbjct: 34  ISQQASQLDEAARKRLQRMNERLKLLEMQMETLEAGVAK 72


>05_03_0498 - 14720989-14722119,14722225-14722839
          Length = 581

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 4   RGQSSTDFRVNLSINIYNIHCRNYVDATPRDHTE 105
           R  +  D    L +N YN+ C N  +ATP  + E
Sbjct: 378 REAARLDPAARLFVNDYNVECANDPNATPEKYIE 411


>01_05_0016 +
           17177812-17178084,17178358-17178480,17178526-17178862,
           17178896-17179039,17179555-17180219
          Length = 513

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 22  DFRVNLSINIYNIHCRNYVDATPRDHTETNTARLGK*RVYRSHNGEYKKDN*FPKLFR 195
           DF +  +  I+++  R      P  HT  +   LGK R  + HN      N + K+FR
Sbjct: 164 DFDITKADKIFDLLLREKQIQLPAGHTIPSAEELGKKRYCKWHNSGSHSTNDY-KVFR 220


>02_03_0097 +
           15166077-15166349,15166623-15166694,15166715-15167161,
           15167579-15167794,15167873-15168213,15168329-15168947
          Length = 655

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 22  DFRVNLSINIYNIHCRNYVDATPRDHTETNTARLGK*RVYRSHNGEYKKDN*FPKLFR 195
           DF +  +  I+++  R      P  HT  +   LGK R  + HN      N + K+FR
Sbjct: 159 DFDITKADKIFDLLLREKQIQLPTGHTIPSAEELGKKRYCKWHNSGSHTTNDY-KVFR 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,729
Number of Sequences: 37544
Number of extensions: 124069
Number of successful extensions: 305
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)