Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L24
(393 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-55|CAN99710.1| 74|Caenorhabditis elegans Hypothetical p... 91 3e-19
Z70685-1|CAA94607.1| 522|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z19122-1|CAA79529.1| 522|Caenorhabditis elegans hypothetical po... 28 2.1
Z82062-3|CAB04892.1| 384|Caenorhabditis elegans Hypothetical pr... 27 4.8
U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical pr... 27 4.8
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 27 4.8
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z78064-10|CAB01510.3| 299|Caenorhabditis elegans Hypothetical p... 26 8.4
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 26 8.4
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 26 8.4
AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical ... 26 8.4
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 26 8.4
AF039713-10|AAB96721.1| 691|Caenorhabditis elegans Hypothetical... 26 8.4
>Z99281-55|CAN99710.1| 74|Caenorhabditis elegans Hypothetical
protein Y57G11C.12a protein.
Length = 74
Score = 90.6 bits (215), Expect = 3e-19
Identities = 38/70 (54%), Positives = 58/70 (82%)
Frame = +2
Query: 92 ETIQKQIQQDWVNREYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLERKIDYLE 271
E +Q+Q++ DW NRE+ ++I +IK I +FL+SF++SCR+ LATL++KL LERK+++LE
Sbjct: 5 EAVQQQLKDDWDNREFEQIIADNIKNIANFLSSFELSCRTKLATLSDKLNLLERKVEFLE 64
Query: 272 ACVTKGETLT 301
A VTKG+TL+
Sbjct: 65 ARVTKGDTLS 74
>Z70685-1|CAA94607.1| 522|Caenorhabditis elegans Hypothetical
protein R07D5.1 protein.
Length = 522
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Frame = -2
Query: 353 CSCYXXXXXXIL--LFNS-IMLEFLLLSHMLPNNQFSF---LMKSISH 228
C CY + L+++ ++L+F LL+H+L +N ++ L+K + H
Sbjct: 314 CGCYVTMLYIGIKVLYSANVLLQFFLLNHLLGSNDLAYGFSLLKDLMH 361
>Z19122-1|CAA79529.1| 522|Caenorhabditis elegans hypothetical
polypeptide protein.
Length = 522
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Frame = -2
Query: 353 CSCYXXXXXXIL--LFNS-IMLEFLLLSHMLPNNQFSF---LMKSISH 228
C CY + L+++ ++L+F LL+H+L +N ++ L+K + H
Sbjct: 314 CGCYVTMLYIGIKVLYSANVLLQFFLLNHLLGSNDLAYGFSLLKDLMH 361
>Z82062-3|CAB04892.1| 384|Caenorhabditis elegans Hypothetical
protein W02A11.5 protein.
Length = 384
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 131 REYIEVITGSIKKI----TDFLNSFDMSCRSSLATLNEKLTSLERKIDYL 268
RE+++V + +K I + FLN + S ++S E L ++E+K + L
Sbjct: 62 REHVQVSSDELKSIRTANSGFLNKIEESLKTSQQEAREDLKAIEKKNESL 111
>U23452-4|ABE73334.1| 1316|Caenorhabditis elegans Hypothetical protein
R07G3.3c protein.
Length = 1316
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 134 EYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLERKIDYLEACVTKGET 295
+ IE ++K T+ LNS + R A +EKL L + + L A +T T
Sbjct: 1071 QMIEHAERLLQKKTEELNSIEEENRQKQAEYDEKLAQLSLQYESLSANLTNQNT 1124
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 134 EYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLERKIDYLEACVTKGET 295
+ IE ++K T+ LNS + R A +EKL L + + L A +T T
Sbjct: 1071 QMIEHAERLLQKKTEELNSIEEENRQKQAEYDEKLAQLSLQYESLSANLTNQNT 1124
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 134 EYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLERKIDYLEACVTKGET 295
+ IE ++K T+ LNS + R A +EKL L + + L A +T T
Sbjct: 1071 QMIEHAERLLQKKTEELNSIEEENRQKQAEYDEKLAQLSLQYESLSANLTNQNT 1124
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 92 ETIQKQIQQDWVNREYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLER 253
E Q +I W N E + G + T+ + FD +C S+ + K L+R
Sbjct: 1011 EVRQHKINAMWDNLERLRKQRGVRLEATERVADFDTTCESAREWMLSKFEQLDR 1064
>Z78064-10|CAB01510.3| 299|Caenorhabditis elegans Hypothetical
protein F57B1.1 protein.
Length = 299
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 261 SIFLSNEVNFSFNVARLDLQDISKEFRKSVIFFIL 157
S+F+ + +NF NV I+KEF +S F+ +
Sbjct: 39 SVFIMSSLNFLINVPATLFALITKEFVQSASFYYM 73
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 92 ETIQKQIQQDWVNREYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLER 253
E Q +I W N E + G + T+ + FD +C S+ + K L+R
Sbjct: 1011 EVRQHKINAMWDNLERLRKQRGVRLEATERVADFDTTCESAREWMLSKFEQLDR 1064
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 13 SSTDFRVNLSINIYNIHCRNYVDA 84
SS + N + Y +HC N +DA
Sbjct: 888 SSRKYTCNCTPGFYGVHCENQIDA 911
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 13 SSTDFRVNLSINIYNIHCRNYVDA 84
SS + N + Y +HC N +DA
Sbjct: 888 SSRKYTCNCTPGFYGVHCENQIDA 911
>AL021487-4|CAA16351.1| 244|Caenorhabditis elegans Hypothetical
protein Y45F10B.8 protein.
Length = 244
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 143 EVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLERKIDYLEACVTKGE 292
++IT +KK ++L+ + + NE++ L+ K+D LEA ++K E
Sbjct: 76 QMITQHLKKRNEYLDDLEEA--------NERIKILDEKLDKLEAKISKTE 117
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 92 ETIQKQIQQDWVNREYIEVITGSIKKITDFLNSFDMSCRSSLATLNEKLTSLER 253
E Q +I W N E + G + T+ + FD +C S+ + K L+R
Sbjct: 1011 EVRQHKINAMWDNLERLRKQRGVRLEATERVADFDTTCESAREWMLSKFEQLDR 1064
>AF039713-10|AAB96721.1| 691|Caenorhabditis elegans Hypothetical
protein F57B10.4 protein.
Length = 691
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 104 KQIQQDWVNREYIEVITGSIKKITDFLNSFDMSCRSSLATLNE-KLTSLERKIDYLEACV 280
+QI +D + ++ VI+ +T L S + C S L+ LN+ LTS+E+ D E C
Sbjct: 221 RQIYEDALKQD---VISQESAMMTQQLESLNELC-SDLSDLNKINLTSIEKFPDCNEVCE 276
Query: 281 TKGETLT 301
E T
Sbjct: 277 LSDELQT 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,865,471
Number of Sequences: 27780
Number of extensions: 128997
Number of successful extensions: 409
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -