Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L23
(250 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0340 + 23294044-23294166,23294395-23294640,23294907-232949... 28 0.91
05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326... 27 1.6
02_04_0582 - 24076614-24076643,24076961-24077440 27 2.1
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734... 26 4.8
03_02_0340 + 7635354-7635621,7635992-7636121,7636865-7636929,763... 25 6.4
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 25 8.5
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 25 8.5
03_05_0854 + 28261454-28261759 25 8.5
02_01_0440 - 3188102-3188372,3189134-3189906 25 8.5
>03_05_0340 +
23294044-23294166,23294395-23294640,23294907-23294945,
23295439-23295805,23295904-23296136,23296496-23296756
Length = 422
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 198 PTSNCDTYYTFSVIDIRVITRTRYPGTRVDRCPSSL 91
PT + +TF+V +RV + GT VDR SSL
Sbjct: 203 PTKDARRNFTFTVHLLRVAAAYSWGGTGVDRAGSSL 238
>05_01_0414 +
3262886-3262957,3264517-3264597,3265115-3265214,
3265473-3265522,3265581-3265671,3266636-3266715,
3266940-3267005,3267761-3267860,3267934-3268011,
3268165-3268232,3268305-3268373,3268485-3268562,
3269561-3269631,3270632-3270709,3270808-3270913,
3271475-3271579,3272256-3272387,3272464-3272571,
3272655-3272764,3272868-3272963,3273155-3273617
Length = 733
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 63 IMDGPAHNLARKMDSGLLLFLDNESGLLHGYRLL----KKYNMYHSLMLDNLCVFRKNTV 230
+MDG A N+ D LL + + L + +YNM HS++L+ L RK +
Sbjct: 419 LMDGFATNMPTNYDELLLSHVIKFNSLKPIIEVFVENGDRYNMLHSVVLELLEYIRKENL 478
Query: 231 DSL 239
+SL
Sbjct: 479 NSL 481
>02_04_0582 - 24076614-24076643,24076961-24077440
Length = 169
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 44 LPVECEYYGRASS*LGKEDGQRSTLVP 124
LPVEC + GR S G +G + VP
Sbjct: 67 LPVECRWSGRVRSFAGAGEGAGAAAVP 93
>04_04_0371 +
24771687-24772081,24772139-24772535,24773394-24773435,
24773571-24774305,24775357-24775480,24775613-24776580,
24776917-24776925
Length = 889
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 47 PVECEYYGRASS*LGKEDG--QRSTLVP 124
P E E G++S LG +DG Q S++VP
Sbjct: 104 PTEAEKTGKSSGELGSDDGAHQGSSMVP 131
>03_02_0340 +
7635354-7635621,7635992-7636121,7636865-7636929,
7637255-7637529,7640204-7640441,7641095-7641228,
7641340-7641414,7641675-7641776,7642154-7642263,
7642334-7642430
Length = 497
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 88 WQGRWTAVYSCSWITSPGYY 147
W W +Y+ S IT P YY
Sbjct: 100 WYHVWPVMYNSSTITEPQYY 119
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 249 TNSSKSLLYSYETRTNCPTSNCDTYYTFSV 160
+N+SK++LY ++CP C ++ F +
Sbjct: 681 SNNSKNILYKTTLFSSCPDHRCLSHELFGM 710
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 132 ESGLLHGYRLLKKYNMYHSLMLDNLCVFRKNTV 230
+ GLL R +H L++D C R N+V
Sbjct: 657 DEGLLRSTRTRTVARYFHQLLVDQKCQQRNNSV 689
>03_05_0854 + 28261454-28261759
Length = 101
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 94 GRWTAVYSCSWITSPGYYTDIDY 162
G WTA C W +P + D+DY
Sbjct: 69 GVWTAKDDCRWRQAPAW--DVDY 89
>02_01_0440 - 3188102-3188372,3189134-3189906
Length = 347
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 6 RANLDRIVNNLFNYQWNVNIMDGPA 80
R ++ + N L++ W+V ++DGP+
Sbjct: 233 RLAINDLPNQLYDVSWDVILVDGPS 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,423,008
Number of Sequences: 37544
Number of extensions: 114827
Number of successful extensions: 245
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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