Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L22
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 102 2e-23
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 102 2e-23
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 64 1e-11
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 27 1.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 2.4
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 3.2
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 25 4.3
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 24 9.8
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 102 bits (245), Expect = 2e-23
Identities = 47/100 (47%), Positives = 62/100 (62%)
Frame = +2
Query: 77 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 256
MK+ +C++SG K+YPG G+ V+ D K F F+N K E+ L R+NPR+++WTVLYRR K
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 257 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 376
KG EE IVGA+L I KRN +PEV
Sbjct: 61 KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 102 bits (245), Expect = 2e-23
Identities = 47/100 (47%), Positives = 62/100 (62%)
Frame = +2
Query: 77 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 256
MK+ +C++SG K+YPG G+ V+ D K F F+N K E+ L R+NPR+++WTVLYRR K
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60
Query: 257 KGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 376
KG EE IVGA+L I KRN +PEV
Sbjct: 61 KGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 63.7 bits (148), Expect = 1e-11
Identities = 27/61 (44%), Positives = 34/61 (55%)
Frame = +2
Query: 77 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 256
M++ C + +YPGHG V+ D K F F SKC M+RNPRKV WT YR+
Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60
Query: 257 K 259
K
Sbjct: 61 K 61
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 175 VQECECLAVHLNHGFSMARIDLVATVSAKTDLHFDST 65
+++ + +V +N A DL+AT+S LH+D++
Sbjct: 392 IEQLQSYSVLINQAIGDAISDLLATISVLNALHWDAS 428
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 2.4
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -1
Query: 378 LTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPFLNLRL---YRTVHVTLRGF 208
+T +L+++ S AP I L+V SS F N + Y ++L+ F
Sbjct: 1001 MTEELLLQISSKLSSVAPKILNAVLYNLVVSDDQISSQEAFENFEVKMAYTVRQLSLKVF 1060
Query: 207 LLIKWAASHLEFKNVNVLPSTLTMV 133
LL + S ++FK NV T +V
Sbjct: 1061 LLFLKSCSDVDFKPYNVFIYTAFVV 1085
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 3.2
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 417 SFAALIACSLCAFLT--SGFMLRLAMMSLSEAPTIARWNFCVLLVRFLACSSSWPFLNL 247
+F +L+ CS+C FLT GF + + ++ T ++ + + A + + P L L
Sbjct: 329 TFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATT---LIIFILYFATAQTLPCLAL 384
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 4.3
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 249 NSKRAKKKNRPRNVQEGHKSSSVQL*ELHSVTSWLNVT*NLK*EKHKENRLSKLQKNRRN 428
N + KK+N P N++ H+ + + L E S+ + + E++K+ R + +K R
Sbjct: 19 NERLLKKENLPANIRVEHERALLGLQEQLSMAQLEHKKQKIF-ERYKKVRFFERKKAERR 77
Query: 429 LPRLQR 446
+ +L++
Sbjct: 78 IKQLEK 83
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 9.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 95 AYSGYKIYPGHGKTMV 142
AY+GYK+Y G+G ++
Sbjct: 154 AYNGYKVYWGNGCAII 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,779
Number of Sequences: 5004
Number of extensions: 31753
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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