Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L22
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    93   1e-19
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    49   1e-06
Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical pr...    30   0.93 
Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical pr...    30   0.93 
Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical pr...    30   0.93 
AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine r...    29   2.1  
AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    28   2.8  
AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine re...    27   6.5  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 46/98 (46%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
 Frame = +2

Query: 77  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 256
           MK+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K K
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 257 K---GQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRN 361
           K   GQE+                + G SL  I+AKRN
Sbjct: 61  KGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +2

Query: 77  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 247
           M+I  C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>Z82263-6|CAJ76936.1|  383|Caenorhabditis elegans Hypothetical
           protein C47A4.2c protein.
          Length = 383

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 450 AFFEALVDFFCSF--AALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLA 277
           +FF    DF   +  A +I  ++C   TS   +   +   ++A T+A   F + L+    
Sbjct: 112 SFFGMAADFPAKYSNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFV 171

Query: 276 CSSSWPF 256
           C  SW F
Sbjct: 172 CLVSWWF 178


>Z82263-3|CAB62793.2|  451|Caenorhabditis elegans Hypothetical
           protein C47A4.2b protein.
          Length = 451

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 450 AFFEALVDFFCSF--AALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLA 277
           +FF    DF   +  A +I  ++C   TS   +   +   ++A T+A   F + L+    
Sbjct: 180 SFFGMAADFPAKYSNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFV 239

Query: 276 CSSSWPF 256
           C  SW F
Sbjct: 240 CLVSWWF 246


>Z82263-2|CAE46670.1|  445|Caenorhabditis elegans Hypothetical
           protein C47A4.2a protein.
          Length = 445

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 450 AFFEALVDFFCSF--AALIACSLCAFLTSGFMLRLAMMSLSEAPTIARWNFCVLLVRFLA 277
           +FF    DF   +  A +I  ++C   TS   +   +   ++A T+A   F + L+    
Sbjct: 174 SFFGMAADFPAKYSNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFV 233

Query: 276 CSSSWPF 256
           C  SW F
Sbjct: 234 CLVSWWF 240


>AF039051-10|AAB94259.3|  313|Caenorhabditis elegans Serpentine
           receptor, class i protein73 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 300 VLLVRFLACSSSWPFLNLRL-YRTVHVTLRGFLLIKWAASHLEFKNVNVL 154
           V  V  + C +   FL L L +   HV + G +LI W ASH     +++L
Sbjct: 245 VQFVTAMLCLAPPIFLTLVLIFEVPHVNVIGEILIAWFASHSSINMISLL 294


>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 444 FEALVDFFCSFAALIACSLCAFLTSGFMLRLAMMSL 337
           F  ++DFFC+ + ++  S     TSG  L + M++L
Sbjct: 77  FFTVLDFFCNISFIVVLSQKELRTSGINLTMIMIAL 112


>AF016446-4|AAC24164.1|  321|Caenorhabditis elegans Serpentine
           receptor, class h protein23 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -1

Query: 447 FFEALVDFFCSFAALIACSLCAFLTSGFMLRLAMMSLSEAPTIA 316
           FFE   DF    A  I   LCA  T+G + +L M SL +   IA
Sbjct: 57  FFEMHSDFL--LAPAIQPPLCAIRTTGILTQLGMSSLVQFYWIA 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,247,294
Number of Sequences: 27780
Number of extensions: 183206
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)