Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L21
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    28   0.61 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   7.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   10.0 
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    24   10.0 
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    24   10.0 
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    24   10.0 

>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 143 NKISQYLLFTCYKVFIMNRTRPMHGDELNPHNM--LNNKKDDDDIRSE 280
           N ++ +  F+ ++  I N  R   G  L+P +   LNN   DDD+RSE
Sbjct: 265 NSLNYFCPFSAFED-ISNSVRSSCGKRLSPSSNFDLNNLGGDDDLRSE 311


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 230 PHNMLNNKKDDDDIRSEIQLYKIKPKEHFIEAQ 328
           P N++NNKK+  +  +E      K KE F E +
Sbjct: 322 PSNVVNNKKELTEFANEEAEASDKRKEGFTEKE 354


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 170  TCYKVFIMNRTRPMHGDELNPHNMLNNKKDDDD 268
            +C ++ IM   + +H   +   + +NNKKD+DD
Sbjct: 1068 SCCQLVIM---KLLHSQPIQNVSDVNNKKDEDD 1097


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 212 HGDELNPHNMLNNKKDDDDIRSEIQLYKIKPKEHFIEAQ 328
           H +E  P      KKD+DD +  ++    K +E +   Q
Sbjct: 81  HTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSATQ 119


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 389 ILKLSNRTLERWLVTCH 339
           ILK  + TLE W VT H
Sbjct: 569 ILKALHATLETWYVTVH 585


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 221 ELNPHNMLNNKKDDDDIRSEIQLY 292
           E++   +LNNK D +D R  I+LY
Sbjct: 174 EVSILELLNNKYDPEDKRHLIRLY 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,164
Number of Sequences: 5004
Number of extensions: 21644
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)