Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L21
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934...    30   0.59 
04_04_1586 - 34621945-34623366                                         28   3.1  
03_05_0806 + 27846204-27846497,27847309-27847683                       28   3.1  
11_06_0085 - 19905784-19906510,19907428-19907557,19907739-19907874     26   9.5  
03_03_0236 - 15696495-15696977,15697290-15697339,15699867-15699906     26   9.5  

>10_08_0506 +
           18390892-18391373,18392699-18392798,18393152-18393485,
           18393756-18393868,18394437-18394565,18394746-18394839,
           18394942-18395025,18395265-18395896,18396662-18396951,
           18397098-18397242,18397876-18397973,18398075-18398156,
           18398607-18398612,18398845-18398928
          Length = 890

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -1

Query: 150 ILLLNYTYLCFIVRNNSNSNTINIYHDLNYN*N 52
           +++ ++   CF+V NN N+  +N+ H+L+ + N
Sbjct: 684 LIMKHFPSFCFVVDNNYNTRDVNLDHELSSSQN 716


>04_04_1586 - 34621945-34623366
          Length = 473

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 140 NNKISQYLLFTCYKVFIMNRTRPMHGDELNPHN 238
           N K+  +LLF    V I++   P     +NPHN
Sbjct: 6   NGKVILFLLFVSTSVLIVSPASPPRFHYINPHN 38


>03_05_0806 + 27846204-27846497,27847309-27847683
          Length = 222

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 329 VREGDTLQAIALRFYCSVSELKR 397
           VR GDT+  IAL++   V+++KR
Sbjct: 82  VRRGDTVPGIALKYSIQVTDIKR 104


>11_06_0085 - 19905784-19906510,19907428-19907557,19907739-19907874
          Length = 330

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 108 NNSNSNTINIYHDLNYN 58
           NNSNSN+ N  H+ N+N
Sbjct: 159 NNSNSNSSNYLHNNNHN 175


>03_03_0236 - 15696495-15696977,15697290-15697339,15699867-15699906
          Length = 190

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 200 TRPMHGDELNPHNMLNNKKDDDDIR 274
           T P H   +  H  +N   DDDD+R
Sbjct: 87  TNPGHSPGIGHHVAINGDVDDDDVR 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,718,371
Number of Sequences: 37544
Number of extensions: 116134
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)