Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L21
         (399 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537972-1|CAD97936.1|  345|Homo sapiens hypothetical protein pr...    35   0.087
BC033515-1|AAH33515.1|  215|Homo sapiens LysM, putative peptidog...    34   0.20 
AY125955-1|AAM94507.1|  215|Homo sapiens putative peptidoglycan ...    34   0.20 
BC058027-1|AAH58027.1|  127|Homo sapiens LYSMD3 protein protein.       29   5.7  
BC031649-1|AAH31649.1|  227|Homo sapiens LysM, putative peptidog...    29   7.5  
AL592424-6|CAI16380.1|  227|Homo sapiens LysM, putative peptidog...    29   7.5  

>BX537972-1|CAD97936.1|  345|Homo sapiens hypothetical protein
           protein.
          Length = 345

 Score = 35.1 bits (77), Expect = 0.087
 Identities = 13/23 (56%), Positives = 21/23 (91%)
 Frame = +2

Query: 329 VREGDTLQAIALRFYCSVSELKR 397
           ++EGDTL AIAL++ C+V+++KR
Sbjct: 108 IQEGDTLNAIALQYCCTVADIKR 130


>BC033515-1|AAH33515.1|  215|Homo sapiens LysM, putative
           peptidoglycan-binding, domain containing 2 protein.
          Length = 215

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +2

Query: 308 EHFIEAQVREGDTLQAIALRFYCSVSELKR 397
           E  +E +VR GDTLQ IAL++  ++ ++KR
Sbjct: 68  ERHVEHRVRAGDTLQGIALKYGVTMEQIKR 97


>AY125955-1|AAM94507.1|  215|Homo sapiens putative peptidoglycan
           binding domain protein-like protein protein.
          Length = 215

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +2

Query: 308 EHFIEAQVREGDTLQAIALRFYCSVSELKR 397
           E  +E +VR GDTLQ IAL++  ++ ++KR
Sbjct: 68  ERHVEHRVRAGDTLQGIALKYGVTMEQIKR 97


>BC058027-1|AAH58027.1|  127|Homo sapiens LYSMD3 protein protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +2

Query: 329 VREGDTLQAIALRFYCSV 382
           ++EGDTL AIAL++ C+V
Sbjct: 69  IQEGDTLNAIALQYCCTV 86


>BC031649-1|AAH31649.1|  227|Homo sapiens LysM, putative
           peptidoglycan-binding, domain containing 1 protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 305 KEHFIEAQVREGDTLQAIALRFYCSVSELKR 397
           +E  +E Q+  GDTL  +AL++  ++ ++KR
Sbjct: 36  RERRLEHQLEPGDTLAGLALKYGVTMEQIKR 66


>AL592424-6|CAI16380.1|  227|Homo sapiens LysM, putative
           peptidoglycan-binding, domain containing 1 protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 305 KEHFIEAQVREGDTLQAIALRFYCSVSELKR 397
           +E  +E Q+  GDTL  +AL++  ++ ++KR
Sbjct: 36  RERRLEHQLEPGDTLAGLALKYGVTMEQIKR 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,702,932
Number of Sequences: 237096
Number of extensions: 674978
Number of successful extensions: 1271
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)