Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L21
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-12|CAN86921.1| 142|Caenorhabditis elegans Hypothetical p... 34 0.033
Z79755-11|CAN86920.1| 209|Caenorhabditis elegans Hypothetical p... 34 0.033
AF000196-1|AAC24252.1| 158|Caenorhabditis elegans Hypothetical ... 29 0.93
AC087079-2|AAK27863.1| 67|Caenorhabditis elegans Hypothetical ... 28 2.1
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical pr... 27 3.7
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 27 3.7
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 27 3.7
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 27 3.7
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 27 5.0
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 27 5.0
Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical pr... 26 8.7
U28944-11|AAA68370.2| 340|Caenorhabditis elegans Hypothetical p... 26 8.7
>Z79755-12|CAN86921.1| 142|Caenorhabditis elegans Hypothetical
protein F43G9.2b protein.
Length = 142
Score = 34.3 bits (75), Expect = 0.033
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 314 FIEAQVREGDTLQAIALRFYCSVSELKR 397
FIE +V+ GDTL +A+++ +V+E+KR
Sbjct: 39 FIERKVKNGDTLNKLAIKYQVNVAEIKR 66
>Z79755-11|CAN86920.1| 209|Caenorhabditis elegans Hypothetical
protein F43G9.2a protein.
Length = 209
Score = 34.3 bits (75), Expect = 0.033
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 314 FIEAQVREGDTLQAIALRFYCSVSELKR 397
FIE +V+ GDTL +A+++ +V+E+KR
Sbjct: 39 FIERKVKNGDTLNKLAIKYQVNVAEIKR 66
>AF000196-1|AAC24252.1| 158|Caenorhabditis elegans Hypothetical
protein B0041.3 protein.
Length = 158
Score = 29.5 bits (63), Expect = 0.93
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 326 QVREGDTLQAIALRFYCSVSELKR 397
QV+ DTL+ IAL+ CSVS L R
Sbjct: 51 QVQTDDTLERIALKHNCSVSSLVR 74
>AC087079-2|AAK27863.1| 67|Caenorhabditis elegans Hypothetical
protein Y37E3.3 protein.
Length = 67
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 314 FIEAQVREGDTLQAIALRFYC 376
F++++ EGD L A+ LR YC
Sbjct: 24 FLQSEYSEGDALDALGLRRYC 44
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 27.5 bits (58), Expect = 3.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 206 PMHGDELNPHNMLNNKKDDDDIRSEI 283
PM D + PHN + DDD++ +++
Sbjct: 454 PMESDIIAPHNSDEEEDDDDEMETDV 479
>Z32840-5|CAD88215.1| 509|Caenorhabditis elegans Hypothetical
protein C07G2.2c protein.
Length = 509
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 188 IMNRTRPMHGDELNPHNMLNNKKD 259
++N MH D L+ N LNNK D
Sbjct: 216 VLNAVLDMHSDRLHTINYLNNKPD 239
>Z32840-4|CAA83680.1| 460|Caenorhabditis elegans Hypothetical
protein C07G2.2b protein.
Length = 460
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 188 IMNRTRPMHGDELNPHNMLNNKKD 259
++N MH D L+ N LNNK D
Sbjct: 167 VLNAVLDMHSDRLHTINYLNNKPD 190
>Z32840-3|CAB63430.2| 457|Caenorhabditis elegans Hypothetical
protein C07G2.2a protein.
Length = 457
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 188 IMNRTRPMHGDELNPHNMLNNKKD 259
++N MH D L+ N LNNK D
Sbjct: 167 VLNAVLDMHSDRLHTINYLNNKPD 190
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 165 KRYWLILLLNYTYLCFIVRNNSNSNTINIYHDL--NYN 58
+ +WL LLL + FI N + +Y DL NYN
Sbjct: 2 RSFWLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYN 39
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 165 KRYWLILLLNYTYLCFIVRNNSNSNTINIYHDL--NYN 58
+ +WL LLL + FI N + +Y DL NYN
Sbjct: 2 RSFWLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYN 39
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 165 KRYWLILLLNYTYLCFIVRNNSNSNTINIYHDL--NYN 58
+ +WL LLL + FI N + +Y DL NYN
Sbjct: 2 RSFWLFLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYN 39
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 218 DELNPHNMLNNKKDDDDIRSEIQLYKIKPKEHFIEAQVRE 337
DE+ N+ +K+DD+ + E P FI +Q+RE
Sbjct: 382 DEIRERNVTKGRKEDDEEKEEADKNGYAPS--FIRSQMRE 419
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 218 DELNPHNMLNNKKDDDDIRSEIQLYKIKPKEHFIEAQVRE 337
DE+ N+ +K+DD+ + E P FI +Q+RE
Sbjct: 382 DEIRERNVTKGRKEDDEEKEEADKNGYAPS--FIRSQMRE 419
>Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical
protein F25B3.3 protein.
Length = 654
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 204 VQCTGMN*TRTIC*ITKKMMMISAVRFSYIKLNQK 308
+ C+G N +T C + K++ +S + +++ NQK
Sbjct: 315 INCSGANFEKTKCISSDKLVKLSKLLSNFLVFNQK 349
>U28944-11|AAA68370.2| 340|Caenorhabditis elegans Hypothetical
protein C18A3.3 protein.
Length = 340
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 224 LNPHNMLNNKKDDDDIRSEIQLYK 295
+ PH+ ++ K ++DD + E+ YK
Sbjct: 112 VTPHSEMDKKVENDDFQRELNFYK 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,286,377
Number of Sequences: 27780
Number of extensions: 120749
Number of successful extensions: 375
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -