Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L20
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    24   3.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   7.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    23   7.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    23   7.0  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    22   9.3  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 50  YNHNNLYNIFHNHNFNRFCDSE 115
           ++H + +N  H H +N  CD E
Sbjct: 540 HHHEHNHNHDHIHKYNEKCDHE 561


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 47  SYNHNNLYNIFHNHNFNRFC 106
           S+ H++L NI H +    FC
Sbjct: 888 SHPHDSLINILHLYPIETFC 907


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 29  NNKFNISYNHNNLYNIFHNHNFN 97
           +NK N + N+N  Y   +N N+N
Sbjct: 608 SNKQNYNNNNNQNYGNNNNQNYN 630



 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 29  NNKFNISYNHNNLYNIFHNHNFNRFCDSE 115
           NN  N +Y +NN  N  +N+N ++  +S+
Sbjct: 614 NNNNNQNYGNNNNQNYNNNNNSSQGGNSQ 642


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 172 TSIL*FISTLTMEKKSCSFFRITK 101
           ++ L F    + +KK+C F R+TK
Sbjct: 369 STFLSFNECASQDKKNCVFSRVTK 392


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 29  NNKFNISYNHNNLYNIFHNHNFNRF 103
           NN       H+N ++I+ N+N+ +F
Sbjct: 215 NNPIINGAAHHNGHHIYFNYNYGQF 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,528
Number of Sequences: 5004
Number of extensions: 6967
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)