Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L20
         (189 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0005 + 34436-34498,34578-35120,35566-35643,35823-35915,360...    29   0.69 
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590...    27   2.8  
12_02_0984 - 25038082-25038264,25038514-25038588,25038693-250387...    25   8.5  
05_07_0336 - 29364751-29365584                                         25   8.5  

>02_01_0005 +
           34436-34498,34578-35120,35566-35643,35823-35915,
           36086-36181,36709-36762,36856-37059,37209-37360,
           37365-37440,38185-38193,38577-38708,39042-39107,
           39885-40184,40332-40640,40976-40996
          Length = 731

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 38  FNISYNHNNLYNIFHNHNFNR 100
           FN+S  H N +N+FH+ +F+R
Sbjct: 559 FNVSICHYNNFNLFHHGDFSR 579


>08_01_0007 -
           57681-57728,58260-58336,58418-58464,58808-58908,
           59016-59108,59418-59540,59637-59755,60154-60510,
           60888-61011
          Length = 362

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 41  NISYNHNNLYNIFHNHNFN 97
           N ++NHN+ +NI ++HN N
Sbjct: 50  NHNHNHNHNHNIHNSHNHN 68



 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 29  NNKFNISYNHN--NLYNIFHNHN 91
           N+  N ++NHN  N +N  HNHN
Sbjct: 50  NHNHNHNHNHNIHNSHNHNHNHN 72



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  NISYNHNNLYNIFHNHNFN 97
           N ++NHN+  +  HNHN N
Sbjct: 52  NHNHNHNHNIHNSHNHNHN 70


>12_02_0984 -
           25038082-25038264,25038514-25038588,25038693-25038725,
           25038753-25038869,25039322-25039402,25040389-25040700
          Length = 266

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 26  CNNKFNISYNHNNLYNIFH 82
           C  +  + YNH +L N+FH
Sbjct: 161 CFGRLVVVYNHRHLSNLFH 179


>05_07_0336 - 29364751-29365584
          Length = 277

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 14  IARTCNNKFNISYNHNNL 67
           + R  NN FN +YN N++
Sbjct: 66  VGRPANNNFNFNYNSNSV 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,336
Number of Sequences: 37544
Number of extensions: 30658
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)