Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L20
         (189 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-10|AAK29727.2|  253|Caenorhabditis elegans F-box a prot...    27   1.4  
U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    25   7.5  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    25   7.5  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      25   7.5  
AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...    25   7.5  
Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical p...    25   9.9  
Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical pr...    25   9.9  

>AC006714-10|AAK29727.2|  253|Caenorhabditis elegans F-box a protein
           protein 21 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 14  IARTCNNKFNISYNHNNLYNIFHNHNFNRFCD 109
           I R    ++N +Y+HNN  + F + +F   CD
Sbjct: 205 IVRVFWPEYNGNYHHNNFIHSFDSSSFRIICD 236


>U39648-3|AAM15603.1|  434|Caenorhabditis elegans Hypothetical
           protein T13C5.2 protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +2

Query: 20  RTCNNKFNISYN----HNNLYNIFHNHNFN 97
           R  NN  N  YN    HNN  N +HNH+ N
Sbjct: 176 RRSNNNNNYDYNYNYHHNNCCN-YHNHSCN 204


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 29  NNKFNISYNHNNLYNIFHNHNFNRFC 106
           N  + I Y  NN YN+  +  F   C
Sbjct: 197 NPNYRIDYYENNCYNLSESFTFKHEC 222


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 29  NNKFNISYNHNNLYNIFHNHNFNRFC 106
           N  + I Y  NN YN+  +  F   C
Sbjct: 197 NPNYRIDYYENNCYNLSESFTFKHEC 222


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 29  NNKFNISYNHNNLYNIFHNHNFNRFC 106
           N  + I Y  NN YN+  +  F   C
Sbjct: 197 NPNYRIDYYENNCYNLSESFTFKHEC 222


>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 2   HEGLIARTCNNKFNISYNHNNLY 70
           HEG  AR   +K N S  HNN Y
Sbjct: 768 HEGSQARFLLSKVNPSLTHNNPY 790


>Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical
           protein T20B3.16 protein.
          Length = 360

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 53  NHNNLYNIFHNHNFNRFCDSEK 118
           N NN YN ++NH + R+ D +K
Sbjct: 231 NDNNCYNNYNNHCYLRY-DKDK 251


>Z69634-6|CAD01081.2|  490|Caenorhabditis elegans Hypothetical
           protein B0001.8 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 53  NHNNLYNIFHNHNFNRFCD 109
           N  N +N+F+N  F   CD
Sbjct: 90  NFQNQFNVFYNSYFGLICD 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,475
Number of Sequences: 27780
Number of extensions: 38008
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)