Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L19
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640...    28   1.8  
06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724     28   2.3  
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    27   4.0  
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716...    26   9.3  

>03_06_0177 +
           32163393-32163443,32163711-32163803,32163875-32164071,
           32164157-32164262,32164391-32164537,32164637-32164756
          Length = 237

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 128 PQVWIPKICWLFTKN 172
           P +W+P +CWL  K+
Sbjct: 59  PTIWLPVVCWLLVKS 73


>06_03_0937 - 26113346-26113645,26113721-26114193,26114436-26114724
          Length = 353

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 217 QP*DTAKAAASTMNTVFSEKPTNFRNPDLGVFVSII 110
           +P   A AAA+  +T   +  ++ R PDLGV +S++
Sbjct: 81  EPVAAAAAAATVASTSVFDNESHTRTPDLGVGLSLV 116


>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
            12346712-12347567,12347760-12347883,12348469-12348688,
            12348771-12349229,12349318-12349519
          Length = 1302

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 20   YDPRLQEFGTRKCL*IILILDEYWEYLILFY 112
            Y+  LQ  G    L  I +LD  W+ L+LFY
Sbjct: 1135 YETGLQNEGYNLTLFWITMLDTLWQSLVLFY 1165


>08_02_1258 -
           25670092-25670152,25671124-25671327,25671400-25671611,
           25671701-25671749,25671833-25672612,25672696-25672767,
           25672907-25672954,25673053-25673127,25673238-25673312,
           25673614-25673668,25673931-25674016,25674759-25674988
          Length = 648

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 228 LNTDRDFRFYMYKNHNWILESYYALGEKIADEKRR 332
           + T +   F ++KN +W+   Y+    +I  E RR
Sbjct: 158 ITTQKKAYFDLHKNDDWLKNKYHPTNLEIVMESRR 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,663,336
Number of Sequences: 37544
Number of extensions: 187428
Number of successful extensions: 361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)