Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L16
         (328 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo...    27   0.72 
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    25   2.2  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    25   3.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    24   5.1  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    23   8.8  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    23   8.8  

>SPBC4C3.04c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -1

Query: 142 FIFDG*SLSKRACSNYPSCRKXSCXARGIHYLERRHRVELHFCSL 8
           F FD  S+SK   +NY       C    + Y + ++   L  CSL
Sbjct: 53  FAFDNVSVSKPLANNYKLLACADCEKGPLGYYDSKNNEYLLLCSL 97


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 101 RARPF-AET-LSVKNKTWQK*LQL*HSPPLAVLNGLLPY 211
           +AR F AE  LS KNK+WQ+   L  SP    + G++ Y
Sbjct: 258 KARAFTAEARLSSKNKSWQEKKYLVLSPFFIAVAGIIVY 296


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +3

Query: 198 DCYRTVYLTDQIGDLKAQYYDWDPRRYQ 281
           D Y+T+     +GD++  ++  +PR+ +
Sbjct: 221 DLYKTIVSLSYLGDIRMSFFAENPRKVE 248


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 195 FNTAKGGECYSCSYFCHVLFLTDKVSAN 112
           F+ + G +C +CS+ CH   +T KV A+
Sbjct: 434 FSYSPGLQCENCSFVCHKKCVT-KVLAS 460


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 LRLYPSKIKHGKNNYSYNTRLL 182
           L +YP +++H  N +S N + L
Sbjct: 203 LSVYPDQVEHPPNRFSMNDKEL 224


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 216 TLYGNSPFNTAKGGECYSCSYF 151
           TL  N+P + + G  C +C+Y+
Sbjct: 422 TLSTNAPPSPSSGRSCSNCNYY 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,666
Number of Sequences: 5004
Number of extensions: 23222
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)