Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L16
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0486 - 29423756-29423965,29425424-29425528                       31   0.28 
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636...    28   2.0  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    27   3.5  
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305...    26   6.1  
01_06_1098 + 34518608-34519546                                         26   8.0  

>02_05_0486 - 29423756-29423965,29425424-29425528
          Length = 104

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 177 LLWQY*MDCYRTVYLTDQIGD 239
           LLW Y  DC RT Y+TD +GD
Sbjct: 40  LLWLYLFDCMRT-YVTDYVGD 59


>12_01_1092 -
           11362094-11362367,11362739-11362795,11363256-11363683,
           11364350-11365462
          Length = 623

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 204 YRTVYLTDQIGDLKAQYYDW 263
           + T  L+D IGDLK  +Y W
Sbjct: 88  FETFQLSDCIGDLKVSHYSW 107


>07_03_0918 -
           22581625-22581687,22581773-22581868,22581980-22582268,
           22582341-22582477,22582567-22582683,22583277-22583440,
           22583542-22583756,22583838-22584004,22584206-22584559,
           22584647-22584795,22584907-22585030,22585132-22585371,
           22585723-22586140,22586297-22586920,22586999-22587183,
           22587302-22587412,22587583-22587789,22587869-22587967,
           22588063-22588159,22588296-22588384,22588495-22588548,
           22588671-22588793,22588872-22588940,22589020-22589089,
           22589202-22589260,22589367-22589570,22590032-22590060,
           22590375-22590433,22590513-22590634,22591637-22591830,
           22591974-22592088
          Length = 1680

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 196 WTVTVQCISQIRLVTSKPNIMTGTQDAIN 282
           W   ++C+S++  +TS P+I        N
Sbjct: 873 WNAVLECVSRLEYITSNPSIAATVMQGSN 901


>03_05_0859 -
           28329837-28329919,28330062-28330131,28330498-28330549,
           28330671-28330798,28331283-28331483,28332183-28332317,
           28333116-28333275,28333824-28334019,28334070-28334252,
           28334382-28334507,28335090-28335214,28335389-28335541,
           28337267-28337472
          Length = 605

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 172 LASFGSIEWTVTVQCISQIRLVTS 243
           + SFGS+EW  T    +Q  LV S
Sbjct: 76  ITSFGSLEWAKTHDAATQTSLVVS 99


>01_06_1098 + 34518608-34519546
          Length = 312

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 74  LQXPGDPLFRAPPPRGAPL 18
           +Q P D +FR PPP  A L
Sbjct: 74  VQMPKDKVFRVPPPENARL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,974,843
Number of Sequences: 37544
Number of extensions: 163124
Number of successful extensions: 490
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)