Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L16
(328 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78066-2|CAB01524.2| 257|Caenorhabditis elegans Hypothetical pr... 30 0.45
AC006641-12|AAF39810.1| 501|Caenorhabditis elegans Hypothetical... 27 4.2
AC006641-10|AAF39811.1| 501|Caenorhabditis elegans Hypothetical... 27 4.2
AC006641-8|AAF39822.1| 508|Caenorhabditis elegans Hypothetical ... 27 4.2
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 26 5.6
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 26 5.6
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 26 5.6
AC006641-14|AAF39815.3| 190|Caenorhabditis elegans Hypothetical... 26 5.6
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 26 7.4
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 26 7.4
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 26 7.4
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 26 7.4
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 25 9.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 25 9.7
U97017-8|AAB52356.1| 363|Caenorhabditis elegans Hypothetical pr... 25 9.7
U97017-5|AAB52361.2| 312|Caenorhabditis elegans Hypothetical pr... 25 9.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 25 9.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 25 9.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 25 9.7
>Z78066-2|CAB01524.2| 257|Caenorhabditis elegans Hypothetical
protein W06A7.4 protein.
Length = 257
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = -3
Query: 278 IASWVPVIILGFEVTNLICEIHCTVTVHSILPKEASVIAVVIFAMFYF 135
+ +W+ +I+G + + + +T H I PK + + + V F +F
Sbjct: 98 VIAWIGTVIVGLSLGVMTTPVTLLMTRHDIYPKSSEITSPVSFHFSFF 145
>AC006641-12|AAF39810.1| 501|Caenorhabditis elegans Hypothetical
protein F45D11.16 protein.
Length = 501
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 153 NNYSYNTRLLWQY*MDCYRTVYLTDQIGDLKAQYYDWDPRRY 278
NNY++ LL+ Y +DC T+ T + Y + P RY
Sbjct: 187 NNYAHKASLLFDYMIDCVATID-TKTKERFEECYNEIKPERY 227
>AC006641-10|AAF39811.1| 501|Caenorhabditis elegans Hypothetical
protein F45D11.15 protein.
Length = 501
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 153 NNYSYNTRLLWQY*MDCYRTVYLTDQIGDLKAQYYDWDPRRY 278
NNY++ LL+ Y +DC T+ T + Y + P RY
Sbjct: 187 NNYAHKASLLFDYMIDCVATID-TKTKERFEECYNEIKPERY 227
>AC006641-8|AAF39822.1| 508|Caenorhabditis elegans Hypothetical
protein F45D11.14 protein.
Length = 508
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 153 NNYSYNTRLLWQY*MDCYRTVYLTDQIGDLKAQYYDWDPRRY 278
NNY++ LL+ Y +DC T+ T + Y + P RY
Sbjct: 194 NNYAHKASLLFDYMIDCVATID-TKTKERFEECYNEIKPERY 234
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 121 LSKRACSNYPSCRKXSCXARGIHYLERRHR 32
++KR NYPSC S +YL+ R +
Sbjct: 227 VAKRRAKNYPSCCPQSAYIDVTYYLQLRRK 256
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 121 LSKRACSNYPSCRKXSCXARGIHYLERRHR 32
++KR NYPSC S +YL+ R +
Sbjct: 227 VAKRRAKNYPSCCPQSAYIDVTYYLQLRRK 256
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 121 LSKRACSNYPSCRKXSCXARGIHYLERRHR 32
++KR NYPSC S +YL+ R +
Sbjct: 227 VAKRRAKNYPSCCPQSAYIDVTYYLQLRRK 256
>AC006641-14|AAF39815.3| 190|Caenorhabditis elegans Hypothetical
protein F45D11.1 protein.
Length = 190
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 153 NNYSYNTRLLWQY*MDC 203
NNY++ LL++Y MDC
Sbjct: 46 NNYAHKASLLFEYMMDC 62
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical protein
C09H6.1b protein.
Length = 1309
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 174 ECYSCSYFCHV 142
+C SC YFCHV
Sbjct: 1260 KCPSCEYFCHV 1270
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical protein
C09H6.1a protein.
Length = 1311
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 174 ECYSCSYFCHV 142
+C SC YFCHV
Sbjct: 1262 KCPSCEYFCHV 1272
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 220 SQIRLVTSKPNIMTGTQDAINYNQLYLREVLTPEI 324
S+ +++ S+P+ + D N +Q+ L EV +PE+
Sbjct: 2716 SEQKIIISEPSDRRKSVDFSNPSQISLNEVFSPEV 2750
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 220 SQIRLVTSKPNIMTGTQDAINYNQLYLREVLTPEI 324
S+ +++ S+P+ + D N +Q+ L EV +PE+
Sbjct: 2716 SEQKIIISEPSDRRKSVDFSNPSQISLNEVFSPEV 2750
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +1
Query: 7 KGNKSG-APRGGGALNSGSPG 66
KGN P GGG N G+PG
Sbjct: 349 KGNSGPPGPPGGGTFNDGAPG 369
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +1
Query: 7 KGNKSG-APRGGGALNSGSPG 66
KGN P GGG N G+PG
Sbjct: 348 KGNSGPPGPPGGGTFNDGAPG 368
>U97017-8|AAB52356.1| 363|Caenorhabditis elegans Hypothetical
protein F47B3.1 protein.
Length = 363
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 159 YSYNTRLLWQY*MDCYRTVYLTDQIGDLKAQYYDW 263
Y Y R+L Y ++ Y+ Y +GD +Y W
Sbjct: 318 YLYLHRVLLSYFLERYKETYAELLVGDYGEKYKKW 352
>U97017-5|AAB52361.2| 312|Caenorhabditis elegans Hypothetical
protein F47B3.6 protein.
Length = 312
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 159 YSYNTRLLWQY*MDCYRTVYLTDQIGDLKAQYYDW 263
Y Y R+L Y ++ Y+ Y +GD +Y W
Sbjct: 267 YLYLHRVLLSYFLERYKETYAELLVGDYGEKYKKW 301
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +1
Query: 7 KGNKSG-APRGGGALNSGSPG 66
KGN P GGG N G+PG
Sbjct: 348 KGNSGPPGPPGGGTFNDGAPG 368
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +1
Query: 7 KGNKSG-APRGGGALNSGSPG 66
KGN P GGG N G+PG
Sbjct: 349 KGNSGPPGPPGGGTFNDGAPG 369
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = +1
Query: 7 KGNKSG-APRGGGALNSGSPG 66
KGN P GGG N G+PG
Sbjct: 385 KGNSGPPGPPGGGTFNDGAPG 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,381,553
Number of Sequences: 27780
Number of extensions: 138154
Number of successful extensions: 395
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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