Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L15
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...    50   6e-08
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   0.50 
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    23   4.7  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    23   4.7  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   6.2  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 49.6 bits (113), Expect = 6e-08
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +2

Query: 152 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKL 244
           E+TF+ VKPD VQRGL+G II +FE KG+KL
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKL 34


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 237 KPFFSKRSMIVPTRPR*TPSGLT 169
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 252 HPTNLKPFFSKRSMIVPT 199
           HPT+ + F  KR+  VPT
Sbjct: 300 HPTSTEDFGDKRASTVPT 317


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  IKCGILISLYFISIKLN 76
           + CG+ ++ YF SIK N
Sbjct: 124 LACGLYVTSYFFSIKNN 140


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 184 TIGLNHKKGSFTLISHYF-KLN*SPRVESKLFS*ISLIQFDGDKIK*NKNAALDRPMAV 11
           T+  N+KK +  L+ HY  + N    + SKL S +SL     D I   ++A LD  +A+
Sbjct: 66  TVNSNYKKNNALLLLHYLTRKNHGLFLLSKLQSLLSL-DPSTDPIPVYRDALLDFAIAL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 940,481
Number of Sequences: 5004
Number of extensions: 14062
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)