Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L15
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416...    58   1e-09
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835...    56   3e-09
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215...    56   4e-09
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406...    56   5e-09
03_02_0207 - 6411324-6412895                                           28   1.2  
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877...    25   8.4  
04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781...    25   8.4  

>05_07_0347 -
           29440541-29440664,29440908-29441020,29441522-29441689,
           29442341-29442391,29442518-29442555,29442885-29442978
          Length = 195

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = +2

Query: 131 EIMADQRERTFLMVKPDGVQRGLVGTIIERFEKKGFKLV 247
           E  A + ERTF+ +KPDGVQRGL+  I+ RFE+KGFKLV
Sbjct: 39  EAHAAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLV 77


>07_03_0445 -
           18281715-18281832,18282274-18282505,18283486-18283534,
           18283733-18283783
          Length = 149

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +2

Query: 152 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVG 250
           E++F+M+KPDGVQRGL+G II RFEKKGF L G
Sbjct: 2   EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRG 34


>12_02_0695 +
           22220054-22220056,22221226-22221276,22221415-22221501,
           22222064-22222144,22222241-22222353,22222482-22222531,
           22222790-22222857
          Length = 150

 Score = 56.0 bits (129), Expect = 4e-09
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +2

Query: 152 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLVG 250
           E++++M+KPDGVQRGLVG II RFEKKGF L G
Sbjct: 3   EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKG 35


>10_08_0945 -
           21738643-21738760,21740056-21740287,21740582-21740630,
           21740720-21740776
          Length = 151

 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +2

Query: 152 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKL 244
           E+TF+M+KPDGVQRGL+G +I RFEKKGF L
Sbjct: 4   EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYL 34


>03_02_0207 - 6411324-6412895
          Length = 523

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +2

Query: 131 EIMADQRERTFLMVKPDGVQRGLV---GTIIERFEKKGF 238
           E+++ Q  RTF++ +P GV RG++      +ERF + GF
Sbjct: 64  EVLSRQPTRTFVLRRPGGV-RGVITANPANVERFLRSGF 101


>07_03_0391 -
           17587144-17587323,17587460-17587566,17587664-17587742,
           17587850-17587939,17588337-17588588,17588748-17588894,
           17589071-17589246,17589303-17589394,17589582-17589673
          Length = 404

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 20  WTIKCGILISLYFISIKLNK*YLTK*LRFDPW 115
           +TI  G L+ +  +++ LN       L+FDPW
Sbjct: 311 YTIPSGWLVMISPMAVHLNPELFEDPLKFDPW 342


>04_04_0848 -
           28677545-28677635,28677760-28677887,28678020-28678126,
           28678242-28678320,28678426-28678515,28678603-28678854,
           28680351-28680497,28680711-28681035,28681177-28681406
          Length = 482

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 20  WTIKCGILISLYFISIKLNK*YLTK*LRFDPW 115
           +TI  G L+ +  +++ LN       L+FDPW
Sbjct: 376 YTIPSGWLVMISPMAVHLNPKLFEDPLKFDPW 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,980,114
Number of Sequences: 37544
Number of extensions: 83669
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)