Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L15
         (252 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    54   1e-08
Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    26   3.1  

>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 152 ERTFLMVKPDGVQRGLVGTIIERFEKKGFKLV 247
           ERTF+ +KPDGV RGLVG II RFE++G+KLV
Sbjct: 5   ERTFIAIKPDGVHRGLVGKIIARFEERGYKLV 36


>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 23  TIKCGILISLYFISIK 70
           ++KCG L+SLY ISI+
Sbjct: 178 SVKCGTLLSLYSISIQ 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,160,201
Number of Sequences: 27780
Number of extensions: 77204
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)