Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L14
(233 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1060 + 10958632-10958871,10959006-10959272 114 1e-26
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 26 3.7
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138... 26 3.7
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 26 3.7
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 26 3.7
09_01_0129 - 1954470-1955129,1956285-1956371,1956475-1956663,195... 26 4.9
09_01_0111 + 1727021-1727206,1727324-1727373,1727440-1727491,172... 26 4.9
02_05_0446 - 29091389-29091559,29091722-29091774,29091945-290923... 25 6.5
09_03_0217 + 13532018-13532405,13532706-13533175 25 8.6
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800... 25 8.6
>12_01_1060 + 10958632-10958871,10959006-10959272
Length = 168
Score = 114 bits (274), Expect = 1e-26
Identities = 48/56 (85%), Positives = 52/56 (92%)
Frame = +3
Query: 63 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMEE 230
+FY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE +V P V+ E
Sbjct: 16 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLRE 71
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 34 CIFHKKRCRQISIYVITWATKANLA 108
CIFH+KR R++ V TW + N A
Sbjct: 55 CIFHRKRARKV---VDTWEKQYNSA 76
>11_01_0172 -
1383568-1384440,1385336-1385401,1385470-1385505,
1385604-1385743,1386978-1387134,1387245-1387418,
1387540-1387790,1390296-1390446
Length = 615
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 34 CIFHKKRCRQISIYVITWATKANLA 108
CIFH+KR R++ V TW + N A
Sbjct: 57 CIFHRKRARKV---VDTWEKQYNSA 78
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +3
Query: 69 YIRYYVGHKGKFGHEFLEFEFRPDGKLR---YANNSNYKNDT 185
Y+ +GH + GH L +EF +G L+ Y N + K +T
Sbjct: 184 YLLGLIGHCSEGGHRLLVYEFMANGGLQEHLYPNGAFEKIET 225
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 67 KSVDIFFYEKCNRLLLDY 14
KS+D F +EK N +LLD+
Sbjct: 598 KSLDYFLFEKSNSVLLDW 615
>09_01_0129 -
1954470-1955129,1956285-1956371,1956475-1956663,
1956772-1956900,1957386-1957472,1957572-1958036,
1959844-1959923,1961295-1961358,1961444-1961455
Length = 590
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 16 NLKVSGCIFHKKRCRQISIYVITWATKANLAM 111
NLK+ G I RC+Q++ + T+ N+ M
Sbjct: 31 NLKMKGQILVNGRCQQLAFGTSAYVTQENVLM 62
>09_01_0111 +
1727021-1727206,1727324-1727373,1727440-1727491,
1727553-1727598,1727671-1727690,1727897-1727983,
1729290-1729466,1729542-1729565,1729639-1729725,
1729799-1729870,1730622-1732496
Length = 891
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 31 GCIFHKKRCRQISIYVITWATKANLAM 111
GCI H++R Q S++ + A K +L++
Sbjct: 452 GCILHQQRSIQTSVWCFSKALKYSLSL 478
>02_05_0446 -
29091389-29091559,29091722-29091774,29091945-29092373,
29093411-29094191
Length = 477
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 96 GKFGHEFLEFEFR---PDGKLRYANNSNYKNDTMIRK 197
G++GH+ EFEF+ PD +R N N RK
Sbjct: 171 GEYGHDQAEFEFQHGNPDATVRPVNVGRPANGGTPRK 207
>09_03_0217 + 13532018-13532405,13532706-13533175
Length = 285
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 156 HTVVYHPAEIRILEIHGQI 100
H +VYH AEI +LE G +
Sbjct: 162 HNIVYHFAEICLLESSGDL 180
>01_06_1675 +
39078774-39078890,39079607-39079723,39079950-39080006,
39080340-39080417,39080553-39080597,39080872-39080931,
39081149-39081271,39081850-39081927,39082056-39082125,
39082612-39082719,39082962-39083095,39083177-39083247,
39083384-39083432,39083507-39083557
Length = 385
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 150 VVYHPAEIRILEIHGQICLCGPRNNVYRNLSTSFFMKNA 34
++ P+ ILE H + + NN + + +SFF K A
Sbjct: 246 IIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFKYA 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,952,242
Number of Sequences: 37544
Number of extensions: 97328
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 56
effective length of database: 12,690,884
effective search space used: 266508564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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