Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L14
         (233 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical pr...   111   8e-26
AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.   109   3e-25
U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    27   1.3  
AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical...    27   2.4  
AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical...    27   2.4  
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical...    27   2.4  
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam...    27   2.4  
AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gam...    27   2.4  
Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    25   5.4  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    25   5.4  
Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical pr...    25   7.2  
Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U28739-2|AAB93455.1|  286|Caenorhabditis elegans Lysozyme protei...    25   7.2  
L15313-11|AAK68622.1|  208|Caenorhabditis elegans Hypothetical p...    25   7.2  
Z95559-4|CAB09004.1|  110|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    25   9.5  
U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    25   9.5  

>Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical
           protein R09B3.5 protein.
          Length = 152

 Score =  111 bits (266), Expect = 8e-26
 Identities = 48/62 (77%), Positives = 54/62 (87%)
 Frame = +3

Query: 48  KKMSTDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVME 227
           ++ + DFY+RYYVGHKGKFGHEFLEFEFRP+G LRYANNSNYKNDTMIRKEA V   V+ 
Sbjct: 5   EEKAADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYANNSNYKNDTMIRKEATVSESVLS 64

Query: 228 EL 233
           EL
Sbjct: 65  EL 66


>AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.
          Length = 147

 Score =  109 bits (261), Expect = 3e-25
 Identities = 47/59 (79%), Positives = 51/59 (86%)
 Frame = +3

Query: 57  STDFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMEEL 233
           + DFY+RYYVGHKGKFGHEFLEFEFRP+G LRY NNSNYKNDTMIRKEA V   V+ EL
Sbjct: 3   AADFYVRYYVGHKGKFGHEFLEFEFRPNGSLRYGNNSNYKNDTMIRKEATVSESVLSEL 61


>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -3

Query: 168 LNYWHTVVYHPAEIRILEIHGQICLCGPRNNVYRNLSTSFFMKNATAYF 22
           LN W    Y      +L +    C C  +N V   L   FF +N TA F
Sbjct: 227 LNQW---TYEAMIHEMLTLTNNRCTCTDQNIVLSELHDEFFARNITANF 272


>AL031633-14|CAA21032.1|  903|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15c protein.
          Length = 903

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 150 VVYHPAEIRILEIHGQICLCGPRNNVYRNL 61
           +++H A+ +IL+ +G+ CL   R+N +R +
Sbjct: 796 LIWHNADAQILDNNGRSCLFYARSNGFREV 825


>AL031633-13|CAA21027.1|  951|Caenorhabditis elegans Hypothetical
           protein Y39A1A.15b protein.
          Length = 951

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 150 VVYHPAEIRILEIHGQICLCGPRNNVYRNL 61
           +++H A+ +IL+ +G+ CL   R+N +R +
Sbjct: 844 LIWHNADAQILDNNGRSCLFYARSNGFREV 873


>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
            protein Y39A1A.15a protein.
          Length = 1107

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 150  VVYHPAEIRILEIHGQICLCGPRNNVYRNL 61
            +++H A+ +IL+ +G+ CL   R+N +R +
Sbjct: 1000 LIWHNADAQILDNNGRSCLFYARSNGFREV 1029


>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma 1B
            protein.
          Length = 1107

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 150  VVYHPAEIRILEIHGQICLCGPRNNVYRNL 61
            +++H A+ +IL+ +G+ CL   R+N +R +
Sbjct: 1000 LIWHNADAQILDNNGRSCLFYARSNGFREV 1029


>AJ132700-1|CAA10736.1|  952|Caenorhabditis elegans centaurin gamma
           1A protein.
          Length = 952

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 150 VVYHPAEIRILEIHGQICLCGPRNNVYRNL 61
           +++H A+ +IL+ +G+ CL   R+N +R +
Sbjct: 845 LIWHNADAQILDNNGRSCLFYARSNGFREV 874


>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 174 CNLNYWHTVVYHPAEIRILEIHGQICLCGPRNNV 73
           C ++   T VYH A+  IL   G +   GP   V
Sbjct: 298 CTIHQPSTSVYHMADQLILLSQGHVAYAGPAKQV 331


>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +3

Query: 72  IRYYVGHKGKFGHEF----LEFEFRPDGKL 149
           I  YVG  G+F  ++    LE EF P G L
Sbjct: 109 ISSYVGENGEFARQYLSGELELEFTPQGTL 138


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 81  YVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRK 197
           Y+G K +F      F+FR   +LRY   S +K   ++ K
Sbjct: 214 YLG-KDRFCFIVTPFKFRSQFRLRYYKKSPFKRSNILEK 251


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 81  YVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRK 197
           Y+G K +F      F+FR   +LRY   S +K   ++ K
Sbjct: 214 YLG-KDRFCFIVTPFKFRSQFRLRYYKKSPFKRSNILEK 251


>Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical
           protein C31E10.1 protein.
          Length = 350

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 90  GPRNNVYRNLSTSFFMKNATAYF*ITYSSC 1
           GP   V+RN   S F +  + Y  + Y  C
Sbjct: 72  GPAFVVFRNYDNSMFTREMSFYMVLVYCGC 101


>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 41  FIKKDVDRFLYTLLRGPQRQI 103
           F++KDV++FL   +RG  R++
Sbjct: 135 FLEKDVNKFLKHWIRGSNREL 155


>U28739-2|AAB93455.1|  286|Caenorhabditis elegans Lysozyme protein 8
           protein.
          Length = 286

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 85  WATKANLAMNF*NSNFGRMVNYGMPI 162
           W + AN  +NF NS   R   YGM +
Sbjct: 157 WPSNANNNVNFINSIVSRARQYGMTV 182


>L15313-11|AAK68622.1|  208|Caenorhabditis elegans Hypothetical
           protein ZK353.9 protein.
          Length = 208

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 78  YYVGHKGKFGHEF 116
           YY+G +G+F HEF
Sbjct: 165 YYIGLRGEFQHEF 177


>Z95559-4|CAB09004.1|  110|Caenorhabditis elegans Hypothetical
           protein Y41E3.8 protein.
          Length = 110

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
 Frame = -2

Query: 196 LRIIVSFL*FELLAYRSL-----PSGRNSNSRN 113
           + +IV F  F +L +RSL     P+ RNSNS++
Sbjct: 19  VEMIVGFFTFIMLFFRSLLGFTSPTNRNSNSQD 51


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 144 YHPAEIRILEIHGQICL-CGPRNNVYRNLS 58
           Y PAE+   E+HG I L C     V R +S
Sbjct: 389 YWPAEVNKPEVHGDISLTCTIERKVQRAVS 418


>U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical
           protein C32D5.14 protein.
          Length = 116

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 43  HKKRCRQISIYVITWATKANLAMNF*NSNF 132
           HK+R R+  I  I + TK  + +NF   +F
Sbjct: 65  HKRRIRRSDINSIKFQTKILICLNFRKGHF 94


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 144 YHPAEIRILEIHGQICL-CGPRNNVYRNLS 58
           Y PAE+   E+HG I L C     V R +S
Sbjct: 389 YWPAEVNKPEVHGDISLTCTIERKVQRAVS 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,256,356
Number of Sequences: 27780
Number of extensions: 90404
Number of successful extensions: 245
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)