Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L13
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 109 1e-25
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 109 1e-25
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 27 0.79
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.4
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 1.4
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 1.8
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 4.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 5.5
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc... 25 5.5
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 5.5
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 7.3
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 24 7.3
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 24 7.3
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 109 bits (263), Expect = 1e-25
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 189
GI+RD HKR ATG KRA RKKRK+ELGR +NT++GP+RIH VR RGGN K+RALRLD
Sbjct: 2 GITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLD 61
Query: 190 TGNFAWGSE 216
+GNF+WGSE
Sbjct: 62 SGNFSWGSE 70
Score = 74.9 bits (176), Expect = 4e-15
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRK 377
++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G K
Sbjct: 73 SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGSK 124
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 109 bits (263), Expect = 1e-25
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 189
GI+RD HKR ATG KRA RKKRK+ELGR +NT++GP+RIH VR RGGN K+RALRLD
Sbjct: 2 GITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLD 61
Query: 190 TGNFAWGSE 216
+GNF+WGSE
Sbjct: 62 SGNFSWGSE 70
Score = 74.9 bits (176), Expect = 4e-15
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRK 377
++KTRII V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY + +G K
Sbjct: 73 SKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMGSK 124
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 0.79
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 109 WQPGDLTHTSSSYEWAHVC 53
W PG SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 311 DNSILYQGFGTHQFIVRGIINNI 243
+NS+ +Q F +H FI R +IN I
Sbjct: 541 ENSLYHQSFSSHWFISRLLINPI 563
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.6 bits (56), Expect = 1.4
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 19 RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDT 192
RD +K + G K+ + EL +N + Q+ L+ S T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142
Query: 193 GN 198
G+
Sbjct: 1143 GD 1144
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 1.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Frame = +1
Query: 202 AWGSECQPARLVLLMLF-------IMPLTMNWCVPKPW*RMLLS-WW 318
AW S C+P+ VL +F + PLT++W L++ WW
Sbjct: 300 AWISWCKPSSAVLSQIFGVKTGLGLFPLTLDWAQISSLSNPLITPWW 346
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 4.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 22 DHWHKRRATGGKRAPIRKKRKYE 90
D W +A G +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 5.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -2
Query: 251 NNINNTSLAG*HSDPHAKFPVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRP 93
NNI+ T+LA P RRR R PP+ + + P + GRP
Sbjct: 79 NNISTTTLAPPSPSPLRLNEAPRRRGRPRKYPPKPIDEGSE--PIIKRKRGRP 129
>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 266
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -2
Query: 161 LPPRDLTKWMRWG-PSL 114
L P+D+ KW RW PSL
Sbjct: 32 LSPQDILKWCRWTLPSL 48
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 5.5
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 22 DHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLDTGNF 201
+ W K T K+ +KRK L R A +L + + + S+GG +A + ++
Sbjct: 32 EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAKKNSSLD 90
Query: 202 AWGSE 216
A+ +E
Sbjct: 91 AFLNE 95
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.2 bits (50), Expect = 7.3
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 203 AKFPVSRRRA-RYLVLPPRDLTKW 135
AK P+ +RR + L+L RDLT W
Sbjct: 420 AKKPILKRRTPQELLLSGRDLTPW 443
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 207 PCEVSSIKTQGTIFSVTTTGSD 142
P V+SIK GT FS G+D
Sbjct: 768 PTAVASIKVSGTEFSTLLHGND 789
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.2 bits (50), Expect = 7.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 356 VVAFIPLPERRGIHHDNSI--LYQGFGTHQFIVRGIINN 246
++ F+ L E IH N LY+ F T +++GI++N
Sbjct: 100 LLPFLILEELMDIHTVNECAKLYEYFETRPSLMKGIVSN 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,265
Number of Sequences: 5004
Number of extensions: 36135
Number of successful extensions: 90
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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