Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L13
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 102 9e-23
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 102 1e-22
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 30 0.76
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 1.3
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 1.8
06_01_0913 - 7042230-7043332,7043420-7043621 28 3.1
04_01_0379 - 5005811-5006449,5007068-5007121,5007516-5007584 28 3.1
04_01_0368 + 4839043-4839483 28 3.1
09_03_0103 - 12383585-12384700 27 4.1
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 27 5.4
05_05_0137 - 22641577-22642119 27 5.4
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 5.4
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 26 9.4
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 102 bits (245), Expect = 9e-23
Identities = 49/70 (70%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRL 186
GISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALRL
Sbjct: 2 GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRL 61
Query: 187 DTGNFAWGSE 216
DTGN++WGSE
Sbjct: 62 DTGNYSWGSE 71
Score = 91.5 bits (217), Expect = 2e-19
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGA 386
TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 74 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKA 128
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 102 bits (244), Expect = 1e-22
Identities = 49/70 (70%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGNTKYRALRL 186
GISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN K+RALRL
Sbjct: 2 GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRL 61
Query: 187 DTGNFAWGSE 216
DTGN++WGSE
Sbjct: 62 DTGNYSWGSE 71
Score = 91.5 bits (217), Expect = 2e-19
Identities = 42/55 (76%), Positives = 49/55 (89%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGA 386
TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 74 TRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKA 128
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 29.9 bits (64), Expect = 0.76
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 79 RKYELGRPAANTKLGPQRIHLVRSR----GGNTKYRALRLDTGN-FAWGS 213
R+ +LG P+ +T+ P+R+ +++R K+ A DTG F WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 34 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 168
KRR GG+RA R+K + E GR A + R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 34 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTKYRALR 183
KRR GG+RA R+K + E GR A + + R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRR 131
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 34 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 168
+RR GG+RA R+K + E GR A + R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 109 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 17
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 194 PVSRRRARYLVLPPRDLTKWMRWGPSLVLAAGRPNSY 84
P +R+ R+ P +T + W P L +AAGRP ++
Sbjct: 180 PGTRKFWRW-AFPTHGVTVSVYWAPFLAMAAGRPENF 215
>04_01_0379 - 5005811-5006449,5007068-5007121,5007516-5007584
Length = 253
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 7 GGISRDHWHKRRATGGKRA 63
GG+ D WH+RRA +RA
Sbjct: 3 GGVGADQWHQRRAGSCQRA 21
>04_01_0368 + 4839043-4839483
Length = 146
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 7 GGISRDHWHKRRATGGKRA 63
GG+ D WH+RRA +RA
Sbjct: 109 GGVGADQWHQRRAGSCQRA 127
>09_03_0103 - 12383585-12384700
Length = 371
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -2
Query: 392 ELGTFLPSEWQQVVAFIPLPERRGIHHDNSILYQGFGTHQFIVRGIINNIN 240
E+ T W+Q+ +F P RG+H + ++ Y ++I IN +N
Sbjct: 181 EIFTIGDKSWRQIGSFHGAPTDRGVHVNGAVYY--LTKFRYIASSRINCLN 229
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 209 PHAKFPVSRRRARYLVLPPRDLTKWMRWGP 120
P +RRR R+ + PPR +RW P
Sbjct: 18 PSPAVAATRRRLRFPLAPPRPRPPPLRWSP 47
>05_05_0137 - 22641577-22642119
Length = 180
Score = 27.1 bits (57), Expect = 5.4
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -2
Query: 209 PHAKFPVSRR-------RARYLVLPPRDLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLP 51
PHA +S R R R +PP LT G L + P S LFLR GAR
Sbjct: 27 PHAALAISHRGKSCVRARGRRGRIPPAPLTA----GHESCLVSAVPLSGTLFLRSGAREL 82
Query: 50 PVA 42
P+A
Sbjct: 83 PLA 85
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 149 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 33
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 274 WCVPKPW*RMLLSWWMPRLSGSG 342
WC + W + SW M RL G G
Sbjct: 104 WCSGRDWHGVRHSWGMGRLGGGG 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,732
Number of Sequences: 37544
Number of extensions: 286144
Number of successful extensions: 663
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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