Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L13
(393 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 134 1e-31
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 134 1e-31
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 134 1e-31
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 134 1e-31
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 113 2e-25
AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for t... 28 9.5
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 134 bits (324), Expect = 1e-31
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 189
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 190 TGNFAWGSEC 219
GNF+WGSEC
Sbjct: 62 VGNFSWGSEC 71
Score = 113 bits (272), Expect = 2e-25
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKL 392
TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKL
Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL 129
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 134 bits (324), Expect = 1e-31
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 189
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 190 TGNFAWGSEC 219
GNF+WGSEC
Sbjct: 62 VGNFSWGSEC 71
Score = 113 bits (272), Expect = 2e-25
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKL 392
TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKL
Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL 129
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 134 bits (324), Expect = 1e-31
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 189
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 190 TGNFAWGSEC 219
GNF+WGSEC
Sbjct: 62 VGNFSWGSEC 71
Score = 113 bits (272), Expect = 2e-25
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKL 392
TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKL
Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL 129
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 134 bits (324), Expect = 1e-31
Identities = 58/70 (82%), Positives = 62/70 (88%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 189
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGGN KYRALRLD
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLD 61
Query: 190 TGNFAWGSEC 219
GNF+WGSEC
Sbjct: 62 VGNFSWGSEC 71
Score = 113 bits (272), Expect = 2e-25
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKL 392
TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKL
Sbjct: 73 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL 129
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 113 bits (272), Expect = 2e-25
Identities = 51/57 (89%), Positives = 55/57 (96%)
Frame = +3
Query: 222 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKL 392
TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKL
Sbjct: 53 TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL 109
Score = 96.3 bits (229), Expect = 3e-20
Identities = 42/53 (79%), Positives = 46/53 (86%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTK 168
GISRD+WHKRR TGGKR P KKRKYELGRPAANTK+GP+RIH VR RGG T+
Sbjct: 2 GISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
>AF521131-1|AAM80488.1| 354|Homo sapiens platelet receptor for type
III collagen protein.
Length = 354
Score = 28.3 bits (60), Expect = 9.5
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 4 RGGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTK 168
R +SRDH H A R ++KK+K EL T + RI ++ SR N K
Sbjct: 43 RFAVSRDHCHCTLAWKTARLHLKKKKKKELNL-VYTTVMNTNRIFKMIFSRVANVK 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,970,359
Number of Sequences: 237096
Number of extensions: 1599156
Number of successful extensions: 6373
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6373
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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