Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L13
(393 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 108 1e-24
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 29 1.2
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 29 1.2
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 29 1.2
U64604-1|AAF98623.1| 243|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 27 3.6
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 27 3.6
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 27 6.3
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 26 8.4
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 8.4
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 8.4
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla... 26 8.4
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 26 8.4
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 26 8.4
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 26 8.4
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 26 8.4
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ... 26 8.4
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 26 8.4
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 108 bits (260), Expect = 1e-24
Identities = 48/69 (69%), Positives = 55/69 (79%)
Frame = +1
Query: 10 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTKYRALRLD 189
GISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN KYRALRLD
Sbjct: 2 GISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLD 61
Query: 190 TGNFAWGSE 216
+GNF+W SE
Sbjct: 62 SGNFSWASE 70
Score = 101 bits (243), Expect = 1e-22
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +3
Query: 219 STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYLLPLGRKKGAKL 392
+TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL
Sbjct: 72 TTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKL 129
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 128 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 12
W S V +GRPN +++G P A+L C S++I
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 421
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 128 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 12
W S V +GRPN +++G P A+L C S++I
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 421
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 128 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLI 12
W S V +GRPN +++G P A+L C S++I
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQII 330
>U64604-1|AAF98623.1| 243|Caenorhabditis elegans Hypothetical
protein F49E7.2 protein.
Length = 243
Score = 28.3 bits (60), Expect = 2.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 155 VVTLNIVPCVLILETSHGDLNVN 223
++ +N+ C+L+ + +HGD+ VN
Sbjct: 39 ILIVNVQSCILLAKDNHGDMKVN 61
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 377 LPSEWQQVVAFIPLPERRGIHHDNSI 300
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 377 LPSEWQQVVAFIPLPERRGIHHDNSI 300
LP E + + IPLP+RRG D++I
Sbjct: 1345 LPDEEDEEMEVIPLPKRRGAAPDSTI 1370
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 26.6 bits (56), Expect = 6.3
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Frame = +1
Query: 88 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSECQPARLVLLMLFIM 258
E R L +R L S+ G T ++ +R +TG F W +C VL+ +
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC-----VLVFNNMK 1217
Query: 259 PLTMNWCVPKPW*RMLLSWWMPRLSGSGM-KATTCCHSEGR 378
PL + K W S W SG + + H EGR
Sbjct: 1218 PLCDVMKINKIWREKDGSEW---FSGCWFARPSETIHDEGR 1255
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 26.6 bits (56), Expect = 6.3
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Frame = +1
Query: 88 ELGRPAANTKLGPQRIHLVRSR---GGNTKYRALRLDTGNFAWGSECQPARLVLLMLFIM 258
E R L +R L S+ G T ++ +R +TG F W +C VL+ +
Sbjct: 1163 EEDRARLEVSLDMERFELEASKDEESGKTYFQQIRSETGKFFWLGQC-----VLVFNNMK 1217
Query: 259 PLTMNWCVPKPW*RMLLSWWMPRLSGSGM-KATTCCHSEGR 378
PL + K W S W SG + + H EGR
Sbjct: 1218 PLCDVMKINKIWREKDGSEW---FSGCWFARPSETIHDEGR 1255
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 175 ALRLDTGNFAWGSECQPARL 234
A+++D G+FAWGS+ + +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRKL 632
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 140 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 51
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 140 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 51
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
protein 8 protein.
Length = 1206
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = -2
Query: 338 LPERRGIHHDNSILYQGFGTHQFIVRGIINNINNTSL---AG*HSDPHAKFPVSRRRARY 168
+PE G H N I H+F+ I+ + +T + G H+ P A V RY
Sbjct: 1038 VPEENGHRHINEIASIALDVHKFLSEFIVPHKRDTKVQCRLGFHTGPVAAAVVGLNAPRY 1097
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 175 ALRLDTGNFAWGSECQPARL 234
A+++D G+FAWGS+ + +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRKL 632
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 175 ALRLDTGNFAWGSECQPARL 234
A+++D G+FAWGS+ + +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRKL 632
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 175 ALRLDTGNFAWGSECQPARL 234
A+++D G+FAWGS+ + +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRKL 632
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 175 ALRLDTGNFAWGSECQPARL 234
A+++D G+FAWGS+ + +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRKL 632
>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1152
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = -2
Query: 338 LPERRGIHHDNSILYQGFGTHQFIVRGIINNINNTSL---AG*HSDPHAKFPVSRRRARY 168
+PE G H N I H+F+ I+ + +T + G H+ P A V RY
Sbjct: 984 VPEENGHRHINEIASIALDVHKFLSEFIVPHKRDTKVQCRLGFHTGPVAAAVVGLNAPRY 1043
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 175 ALRLDTGNFAWGSECQPARL 234
A+++D G+FAWGS+ + +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRKL 632
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,932,483
Number of Sequences: 27780
Number of extensions: 211494
Number of successful extensions: 510
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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