Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L10
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155...   150   4e-37
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974...    30   0.52 
08_02_1052 - 23962374-23963369                                         27   3.6  
09_04_0393 + 17255315-17256019,17256107-17257909                       27   4.8  
04_04_0930 - 29480700-29480853,29481007-29483036                       27   4.8  
01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363...    27   6.3  
07_01_0127 - 955244-956278,956397-956651                               26   8.4  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    26   8.4  
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526...    26   8.4  

>11_01_0198 -
           1556215-1556298,1556412-1556580,1556666-1556921,
           1557000-1557114,1557191-1557441,1557565-1557892,
           1558197-1558358,1558846-1558985,1559325-1559436,
           1560028-1560200,1560411-1560506,1560687-1560930
          Length = 709

 Score =  150 bits (363), Expect = 4e-37
 Identities = 75/122 (61%), Positives = 89/122 (72%)
 Frame = +2

Query: 8   AQSGETADTLMALRYCKRHGALIVGITNTVGSSICRESHCGVHINAGPEIGVASTKAYTS 187
           +QSGETADTL+AL Y   +GAL VGITNTVGS++ R +HCGVHINAG EIGVASTKAYTS
Sbjct: 447 SQSGETADTLLALDYALENGALCVGITNTVGSTLSRRTHCGVHINAGCEIGVASTKAYTS 506

Query: 188 QFVSLVMFALVISEDRISLQKRRADIIEGLHNLDTKIRQVLALDNEVKTLAEDLYRQRSL 367
           Q V +VM AL +  D+IS Q RR  II GL NL + + +V  LD E+K LA  L    SL
Sbjct: 507 QIVVMVMVALAVGSDQISTQVRRQAIISGLSNLPSNVSEVFKLDTEMKELASSLIDSESL 566

Query: 368 LI 373
           L+
Sbjct: 567 LV 568


>09_06_0061 +
           20596360-20596618,20597039-20597158,20597329-20597462,
           20597578-20597730,20597816-20597927,20598022-20598352,
           20598524-20598737,20598842-20598931,20599669-20599924,
           20600029-20600141,20600733-20600831,20600915-20600980,
           20601018-20601167,20601278-20601368,20601710-20601749,
           20603888-20605247,20605478-20605507,20605834-20605885,
           20606264-20606397,20606513-20606665,20607089-20607202
          Length = 1356

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
 Frame = +2

Query: 155 IGVASTKAYTSQFVSLVMFALVISEDRISLQKRRADIIEGLHNLDTKIRQVLALDNEVK- 331
           IG+   K Y+   + L++FAL   + ++ L+ + +D++ GL N +     VL L NEV+ 
Sbjct: 120 IGMDEIKGYSDTMLELLLFAL--EDLKMVLKSQESDLLIGLGNAED---VVLKLVNEVQA 174

Query: 332 ----TLAEDLYRQRSLL 370
               T  E  YR R++L
Sbjct: 175 GLIFTEEEVEYRVRNVL 191


>08_02_1052 - 23962374-23963369
          Length = 331

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 20  ETADTLMALRYCKRHGALIVGIT--NTVGSSICRESHCGVHINAGPEIGVAST 172
           ET+   +A R     G++ V IT  + +    C  SHCG+H +A      A+T
Sbjct: 136 ETSLAALAARLSPHRGSIAVVITAPDVLVDGFCL-SHCGLHASATSAAAAAAT 187


>09_04_0393 + 17255315-17256019,17256107-17257909
          Length = 835

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 242 LQKRRADIIEGLHNLDTKIRQVLALDNEVKTLAEDL 349
           LQK    +I    N +TK R+ +    E++ + +DL
Sbjct: 350 LQKEYTSLISQRDNTETKARKAIVASQEIEKVVQDL 385


>04_04_0930 - 29480700-29480853,29481007-29483036
          Length = 727

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 159 PISGPALIWTPQCDSRHIELPTVLVIPT 76
           P   PA +W P    + IELP V V+ T
Sbjct: 633 PFEKPAFVWPPDGKRQEIELPHVGVLFT 660


>01_01_0492 -
           3632812-3633189,3633563-3633709,3633906-3633995,
           3634278-3634331,3636434-3636598,3637252-3637488,
           3637610-3637696,3637846-3638022
          Length = 444

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +2

Query: 35  LMALRYCKRHGALIVGITNTVGSSICRESHCGVHINAGPEIGVASTKAYTSQF 193
           ++ L+ CK+   LI+  T+   ++ C   HC   +     I + +  + TS +
Sbjct: 254 ILPLKTCKKQQYLILQQTDAYQATGCYNLHCSGFVQTNNRIAIGAAISPTSVY 306


>07_01_0127 - 955244-956278,956397-956651
          Length = 429

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 214 SEHNKRHKLRCISLSRSYADFRAGIDMDTTV*FATYRTSYSIGYSDDKC 68
           S H+ + +L+ I L   + DF + ID+     +   +  YS+    DKC
Sbjct: 48  SGHSLQEQLQKIDLRDRFGDFNSNIDLVLKGKYKCIQEPYSMHLLLDKC 96


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = +2

Query: 128 GVHINA---GPEIGVASTKAYTSQFVSLVMFALV---ISEDRISLQKRRADIIEGLHNL 286
           G H NA   GP++ V+ + +     V  +M  LV   ISE   SL+K R+++IE  H L
Sbjct: 306 GNHANAEGFGPKL-VSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKGRSEVIEQSHTL 363


>02_05_0389 +
           28551649-28551903,28552328-28552402,28552482-28552605,
           28552692-28552978,28553147-28553482,28553813-28553869,
           28554156-28554382,28554465-28554627,28554912-28554938
          Length = 516

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 101 SSICRESHCGVHINAG 148
           S +C ESHC +H+  G
Sbjct: 245 SLLCMESHCKIHVKEG 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,897,203
Number of Sequences: 37544
Number of extensions: 155459
Number of successful extensions: 364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)