Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L08
         (267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   4.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    23   5.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    23   7.2  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    23   7.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.2  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     23   9.6  

>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 226 YYNTIISYSRTKIIFYFYYLFI 161
           Y N ++ Y    II+Y+YYL I
Sbjct: 55  YKNILLKYELF-IIYYYYYLLI 75


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 220 NTIISYSRTKIIFYFYYLFISKN*ISLIY 134
           N +++   ++ IFYF+ L +S   + +IY
Sbjct: 339 NGVLADKESRSIFYFFLLNVSYMFVQVIY 367


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 265  YYHCNNIANIHLHYYNTIISYSRTKIIFYFYYLFISKN 152
            Y H N+  ++ L  ++  +     KII + Y  F  KN
Sbjct: 989  YVHGNSRISVFLESFSCPVPGLEEKIIMWSYCKFCKKN 1026


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 229 HYYNTIISYSRTKIIFYFYYLFI 161
           H  N  I+      IFYF Y FI
Sbjct: 343 HPENVFITIGAIATIFYFSYFFI 365


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -3

Query: 262 YHCNNIANIHLHYYNTIISYSRTKIIFYFYYLFISKN*ISL 140
           +H +++ + H  +++ +     + I+F  + LF+S N  SL
Sbjct: 171 FHISHLISFHFLFFSFLSFPLLSFILFPCFSLFLSSNSFSL 211


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 2   HEALFIQRDTGGVTVSHFI 58
           HE+LF+ RD G  T  H I
Sbjct: 70  HESLFVIRDLGVQTNCHSI 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,621
Number of Sequences: 5004
Number of extensions: 10403
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)