Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L08
         (267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891           29   0.67 
05_03_0057 - 7872771-7873326,7873432-7873786,7873892-7874103,787...    29   0.67 

>07_01_0226 - 1654917-1656923,1658757-1658810,1659128-1660891
          Length = 1274

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 226 YYNTIISYSRTKIIFYFYYLFIS 158
           ++NT  SY+R  ++  F++LFIS
Sbjct: 591 FFNTFTSYARVLLLDLFFFLFIS 613


>05_03_0057 -
           7872771-7873326,7873432-7873786,7873892-7874103,
           7875248-7875453
          Length = 442

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 253 NNIANIHLHYYNTIISYSR 197
           N   + HLHY NTI+S+SR
Sbjct: 239 NGTLDYHLHYANTILSWSR 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,603,147
Number of Sequences: 37544
Number of extensions: 56940
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)