Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L08
         (267 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    26   4.2  
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    25   7.4  
U80027-10|AAC48118.3|  295|Caenorhabditis elegans Serpentine rec...    25   7.4  
U88309-3|AAB42335.2|  333|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = -3

Query: 250 NIANIHLHYYNTII-------SYSRTKIIFYFYYLFI 161
           N+ N+H  YY T+           R  +IF ++YLFI
Sbjct: 104 NLINLHTLYYRTVCLKLINAQEIGRNTLIFSWHYLFI 140


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 238 IHLHYYNTIISYSRTKIIFYFYYLFIS 158
           + ++Y++ I+SY    I+F +  LFI+
Sbjct: 62  VSIYYFSLIVSYISPFILFQYKSLFIA 88


>U80027-10|AAC48118.3|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 5 protein.
          Length = 295

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 226 YYNTIISYSRTKIIFYFYYLFI 161
           Y+ T I  +R K+I +FY LF+
Sbjct: 34  YFITKIGKTRQKMILFFYRLFL 55


>U88309-3|AAB42335.2|  333|Caenorhabditis elegans Hypothetical
           protein T23B3.6 protein.
          Length = 333

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 66  ILRFLDVSVAIDAIGTSATL 125
           I+R  +V VAI+A+GT AT+
Sbjct: 62  IMRTFNVFVAINALGTLATM 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,211,010
Number of Sequences: 27780
Number of extensions: 55703
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)