Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L08
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   1.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    20   4.6  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    20   4.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   6.1  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 265 YYHCNNIANIHLHYYNTIISYSRTKIIFYFYY 170
           Y + NN  N  L+Y N II+  +  +    YY
Sbjct: 104 YNYNNNNYNKKLYYKNYIINIEQIPVPVPVYY 135


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -3

Query: 256 CNNIANIHLHYYNTIISYSRTK 191
           CN       H  N +++Y +TK
Sbjct: 72  CNKCNEKQKHTANKVVNYLKTK 93


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -3

Query: 256 CNNIANIHLHYYNTIISYSRTK 191
           CN       H  N +++Y +TK
Sbjct: 72  CNKCNEKQKHTANKVVNYLKTK 93


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 40  YRVTFYLNKY 69
           Y +T YLN+Y
Sbjct: 82  YTITMYLNQY 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,180
Number of Sequences: 438
Number of extensions: 915
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)