Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L07
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    85   5e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    85   5e-18
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   0.46 
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   1.8  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   2.4  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   3.2  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   5.6  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    24   7.4  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    24   7.4  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    24   7.4  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    24   7.4  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   9.8  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   9.8  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    24   9.8  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    24   9.8  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 84.6 bits (200), Expect = 5e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +1

Query: 100 KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 279
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 280 RRLGTHIRAKRKREELSNVLTQMR 351
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 84.6 bits (200), Expect = 5e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +1

Query: 100 KGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 279
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 280 RRLGTHIRAKRKREELSNVLTQMR 351
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 196  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLTQMR 351
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 257 LSFDTLSNSIALFSYCACPTTS 192
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 184 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 315
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 2   HEGSVNPKSWLPDLKSQL 55
           H+G VN   W+P  KS+L
Sbjct: 314 HKGDVNAVKWMPGSKSKL 331


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 48  RNWSAKRPQNDKDIRWQKGY 107
           +NW    PQ   +  W+KGY
Sbjct: 219 KNWEYPSPQQMYNAMWRKGY 238


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 130 RPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAME 234
           RPA L+ ++T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 245 TLSNSIALFSYCACPTTSRTKSRTNLEC 162
           T+++S  LF+  A   T+ TKS  N+EC
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVEC 877


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 352 SSSVLVRC*ALHASSSRGCVCRGDAS 275
           S  V++   + H S++RGC+   DAS
Sbjct: 406 SDKVIIGYDSFHTSNNRGCLALFDAS 431


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 267  KGALIFRYFEQFHCPL--LILCVPNNFTNQI 181
            KG  I   F     PL  LI CVPNNF  ++
Sbjct: 1117 KGWAISIVFGVISIPLGALIRCVPNNFLRKV 1147


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
 Frame = +1

Query: 73  KTTKISAGKKGITDKAIKIR--PARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKV 246
           K   ++  K+ + +  ++++  P  L+  Q   S+  R+L ++     Q EK+  EL++ 
Sbjct: 424 KQNVVNEAKRYLQETILRLQAIPYHLQVGQAWTSESERELEKK---KEQVEKKQEELMQT 480

Query: 247 SKDKRALKFLKRRLGTHIRAKRKREELSNVLTQM 348
                   FL   +    +AKRK  E+  +L+ +
Sbjct: 481 RIVLEEQVFLVENMIEDAKAKRKFSEVETLLSSL 514


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +1

Query: 67  GHKTTKISAGKKGITDKAIKIRPARLKGI------QTKHSKFV-RDLVREVVGHAQYEKR 225
           G+   K S      TDK   I+P  LKG+       TK ++ + RDL+R V+G    E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788

Query: 226 AME 234
            ++
Sbjct: 789 EIK 791


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +1

Query: 232 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQM 348
           +LLK ++   + K  K+RL  +I  K K+EE+++++ ++
Sbjct: 75  QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/52 (21%), Positives = 22/52 (42%)
 Frame = +1

Query: 58  LRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 213
           L+K     ++ +G   +      ++P  L G   +  KF    +RE+  H +
Sbjct: 359 LKKDSDFKEVPSGDINLESAIALVKPTILLGCSGQPGKFTEKAIREMSKHVE 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,617
Number of Sequences: 5004
Number of extensions: 30335
Number of successful extensions: 111
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)