Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L06
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0323 - 2459854-2460306 174 4e-44
01_01_0263 + 2136858-2137331 171 3e-43
11_01_0317 - 2365493-2365786,2365825-2365953 137 5e-33
05_01_0227 - 1684597-1684727,1685003-1685100,1685176-1685270,168... 29 2.6
02_05_0671 - 30769631-30769803,30770535-30770873,30770952-307710... 28 4.5
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 28 4.5
09_02_0429 + 9306862-9306970,9307834-9307942,9308538-9308616,930... 27 7.9
>12_01_0323 - 2459854-2460306
Length = 150
Score = 174 bits (423), Expect = 4e-44
Identities = 90/145 (62%), Positives = 108/145 (74%)
Frame = +1
Query: 34 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 214 HDXXXXXXXXXXXYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILD 393
YR+++V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK ILD
Sbjct: 61 -SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 394 RRASGRLAALGKDKGKYTEETAATA 468
R+ASGR A K KGK+T E A A
Sbjct: 120 RKASGR--AADKAKGKFTAEDVAAA 142
>01_01_0263 + 2136858-2137331
Length = 157
Score = 171 bits (416), Expect = 3e-43
Identities = 88/145 (60%), Positives = 107/145 (73%)
Frame = +1
Query: 34 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 214 HDXXXXXXXXXXXYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILD 393
YR+++V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK ILD
Sbjct: 61 -SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 119
Query: 394 RRASGRLAALGKDKGKYTEETAATA 468
R+A GR A K KGK+T + A A
Sbjct: 120 RKARGR--AADKAKGKFTADDVAAA 142
>11_01_0317 - 2365493-2365786,2365825-2365953
Length = 140
Score = 137 bits (331), Expect = 5e-33
Identities = 80/145 (55%), Positives = 98/145 (67%)
Frame = +1
Query: 34 MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
MK N VTSSRRK RK HF+APS +RRVLMSA LS ELR K+NV K E +VV+
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVVRGSY-KGREGKVVQ- 58
Query: 214 HDXXXXXXXXXXXYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILD 393
YR+++V+++ERI REK NG++V VGIHPSK V+ KLK++KDRK ILD
Sbjct: 59 ------------VYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILD 106
Query: 394 RRASGRLAALGKDKGKYTEETAATA 468
R+ASGR A K KGK+T E A A
Sbjct: 107 RKASGR--AADKAKGKFTAEDVAAA 129
>05_01_0227 -
1684597-1684727,1685003-1685100,1685176-1685270,
1685360-1685545,1686185-1686298,1686583-1686684,
1686811-1687096,1687242-1687291,1687351-1687479,
1687590-1687724,1688163-1688165
Length = 442
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 27 RQNEVQ*ARDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKT 152
+ + VQ +RD QK E + Q S S Y+++T++ VKT
Sbjct: 268 KDSTVQPSRDAKQKPGPEASIQDLASRAASRYMASTVKSVKT 309
>02_05_0671 -
30769631-30769803,30770535-30770873,30770952-30771036,
30771229-30771369,30771802-30771873,30772183-30772302,
30772606-30772677,30772758-30772895,30773249-30773320,
30773609-30773685,30773761-30773837,30773960-30774077,
30774852-30774930
Length = 520
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 430 LYQEPLACH*LCDPGLFYGLYSSLTSQSHTLKGGY 326
L +E + C CDPGL G+ S S S++ Y
Sbjct: 393 LVEELIGCLLKCDPGLSCGIVKSFISPSNSCPSHY 427
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 397 CDPGLFYGLYSSLTSQSHTLKGGYRRTHWLHWLSHAG 287
C G+ G+ +TS+ L+G RR H +HW H+G
Sbjct: 42 CKDGIVLGVEKLVTSKM-MLEGSNRRIHSVHW--HSG 75
>09_02_0429 +
9306862-9306970,9307834-9307942,9308538-9308616,
9308806-9308922,9309185-9309314,9311071-9311111
Length = 194
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 239 LPTCWPLSCPRTTCTSSSLRIGIDFTLNFCLNSL 138
+P +P P+ CT+ ID N CLN L
Sbjct: 83 VPPTYPHEPPKVKCTTKVYHPNIDLDGNVCLNIL 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,304
Number of Sequences: 37544
Number of extensions: 276818
Number of successful extensions: 742
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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