Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L06
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   157   4e-39
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   118   2e-27
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   118   2e-27
Z92817-4|CAB07297.3|  633|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  157 bits (381), Expect = 4e-39
 Identities = 75/141 (53%), Positives = 103/141 (73%)
 Frame = +1

Query: 34  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 214 HDXXXXXXXXXXXYRKKFVVYIERIQREKANGASVYVGIHPSKCVIVKLKMNKDRKTILD 393
                        YRKKFV++I++I REKANG++V++GIHPSK  I KLK++KDR+ +++
Sbjct: 61  RHKGNTGRVLRC-YRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVE 119

Query: 394 RRASGRLAALGKDKGKYTEET 456
           R+A+GR    G  KGK+T+ET
Sbjct: 120 RKAAGRSRVTGILKGKHTDET 140


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  118 bits (285), Expect = 2e-27
 Identities = 57/103 (55%), Positives = 75/103 (72%)
 Frame = +1

Query: 34  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 214 HDXXXXXXXXXXXYRKKFVVYIERIQREKANGASVYVGIHPSK 342
                        YRKKFV++I++I REKANG++V++GIHPSK
Sbjct: 61  R-HKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  118 bits (285), Expect = 2e-27
 Identities = 57/103 (55%), Positives = 75/103 (72%)
 Frame = +1

Query: 34  MKYNKLVTSSRRKNRKRHFSAPSHIRRVLMSAPLSKELRQKFNVKSMPIRKDDEVQVVRG 213
           MK N  V+S   K+RK HF+APSH RR +MSAPL+KELR K  ++++PIR DDEV V+RG
Sbjct: 1   MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60

Query: 214 HDXXXXXXXXXXXYRKKFVVYIERIQREKANGASVYVGIHPSK 342
                        YRKKFV++I++I REKANG++V++GIHPSK
Sbjct: 61  R-HKGNTGRVLRCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z92817-4|CAB07297.3|  633|Caenorhabditis elegans Hypothetical
           protein W08G11.4 protein.
          Length = 633

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -2

Query: 252 HLYYFAHLLAFIMSSYNLHFVVFADWHRFHVELLS*LFGEWC*HKYSSDVRRGTEMPLPV 73
           HL+YF+ +L+   S    H +VF  W      L      + C H       +   +P P 
Sbjct: 568 HLFYFSKMLSVSASPSYTHSLVFCCW--IETILFEIKSIDNCTHTNPRKPAKSHTLPTPP 625

Query: 72  FPSGRRH 52
            P  +RH
Sbjct: 626 QPKNKRH 632


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 51  RDVVQKEKQEEAFQCPFSHPTSTYVSTTLQRVKTKVQREIYANPQ 185
           RD  +KE+  +     FSH   +    T +    + QR +Y NPQ
Sbjct: 353 RDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQ 397


>Z81487-2|CAB04000.1|  318|Caenorhabditis elegans Hypothetical
           protein C54E10.3 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 88  NASSCFSFWTTSRAYCTSFC 29
           N+SSCF  WT    Y   FC
Sbjct: 113 NSSSCFIHWTWVAMYADRFC 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,621
Number of Sequences: 27780
Number of extensions: 237854
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)