Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L05
         (160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    23   4.1  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    23   5.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      22   9.5  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 39  RRSSK*QVTVSNYTAASVPNGFN 107
           RR     V  + YTA   PNGFN
Sbjct: 91  RRGDNILVLAACYTADGSPNGFN 113


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 32  VSQEIIQITSYCE*LHCCE 88
           + +E++  TS+C+  HC E
Sbjct: 45  LGKEVVVFTSHCDKKHCFE 63


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 122  LGNFVYWLYI 151
            +G FVYW Y+
Sbjct: 1031 IGKFVYWAYV 1040


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,746
Number of Sequences: 5004
Number of extensions: 10117
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)