Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L05
         (160 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p...    25   9.6  
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p...    25   9.6  
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ...    25   9.6  

>Z81585-6|CAB04684.2|  482|Caenorhabditis elegans Hypothetical
           protein T05E12.6a protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -3

Query: 146 KASIQNYLNIMYCIKSIWDTRSSVITHSNLLFG*SPAIQE*FPS 15
           + ++ +Y+N M  ++ I DT ++V+ +S L F  +    E +PS
Sbjct: 408 RLTLTSYMNEMVLLQMIIDTSNTVVPNSTLRFPGTSLSVEYYPS 451


>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
            protein F28D1.10 protein.
          Length = 1141

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 155  SLYKASIQNYLNIMYCIKSIWDTRSSVITH 66
            S YK SIQ  LN  +C+    +T  S + H
Sbjct: 1025 SSYKPSIQASLNNSHCVPMAINTIGSALFH 1054


>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
            protein F28D1.10 protein.
          Length = 1141

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 155  SLYKASIQNYLNIMYCIKSIWDTRSSVITH 66
            S YK SIQ  LN  +C+    +T  S + H
Sbjct: 1025 SSYKPSIQASLNNSHCVPMAINTIGSALFH 1054


>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
            protein.
          Length = 1141

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 155  SLYKASIQNYLNIMYCIKSIWDTRSSVITH 66
            S YK SIQ  LN  +C+    +T  S + H
Sbjct: 1025 SSYKPSIQASLNNSHCVPMAINTIGSALFH 1054


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,774,361
Number of Sequences: 27780
Number of extensions: 54246
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)