Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L04
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    24   2.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   4.1  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    23   4.1  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    23   4.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   5.4  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    23   7.1  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    23   7.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   7.1  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    22   9.4  

>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 1   DEFGTRIYSELFRQY 45
           + FGT++Y EL R+Y
Sbjct: 143 NRFGTKVYEELARKY 157


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 99  HLRWLIITILYIFVLVIASNS*SPDQYGLKMI 194
           H+  LI T+L IFV++      +P  YG K +
Sbjct: 725 HVIELICTLLLIFVVIYCFTFFAPMTYGDKSL 756


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 71  FKLVILNAIPFTMVNYNNFVYFCISNSK 154
           F LV+ +   +++ +  NF+Y  + N+K
Sbjct: 239 FSLVLASETIYSLPSLENFLYMLLKNTK 266


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 148 ITNTKIYKIVIINHRKWN 95
           I NTK Y+++IIN    N
Sbjct: 33  IDNTKDYRVIIINDESLN 50


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 5    SSARGFIQNYSDNII*AYCYLLFK 76
            SS    +  ++DNI+  YC  LFK
Sbjct: 3232 SSTESNLSLFADNILPDYCKQLFK 3255


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 229 FFNILDQIGHYFIIFNP 179
           FFNIL +  + FIIF+P
Sbjct: 133 FFNILLRSFNLFIIFSP 149


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 230 FF*YFRSNWPLFY 192
           +F +   NWP+FY
Sbjct: 182 YFRFINCNWPIFY 194


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 167 ALTITCYY*YKNIQNCYN*PS 105
           AL    YY ++++Q CYN P+
Sbjct: 511 ALLNFIYYFHEHLQPCYNDPN 531


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 86  LNAIPFTMVNYNNFVYFC 139
           LNA PFT    ++ +YFC
Sbjct: 174 LNAWPFTAGCISSVLYFC 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 915,505
Number of Sequences: 5004
Number of extensions: 14749
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)