Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L04
         (236 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse t...    21   4.6  
EF588468-1|ABQ96704.1|  176|Anopheles gambiae transposase protein.     21   6.0  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    21   8.0  

>AJ970250-1|CAI96722.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 101 FTMVNYNNFVYFCIS 145
           F +V YNN +Y C S
Sbjct: 15  FELVIYNNLLYACRS 29


>EF588468-1|ABQ96704.1|  176|Anopheles gambiae transposase protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 65  LLFKLVILNAIPFTMVNYNNFVYF 136
           +L  L+    +PF +V   NF  F
Sbjct: 110 MLLDLICKECLPFNLVESENFKKF 133


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   DEFGTRIYSELFRQYHLSVL 60
           DE+G RIY +   +  LS L
Sbjct: 914 DEYGIRIYVKYRNEEKLSAL 933


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,292
Number of Sequences: 2352
Number of extensions: 3630
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 52
effective length of database: 441,675
effective search space used: 11483550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)