Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L04
         (236 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    27   1.3  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       27   1.3  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    26   3.1  
U80439-9|AAO38675.1|  661|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AL110479-28|CAJ76967.1|  213|Caenorhabditis elegans Hypothetical...    25   7.2  
AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical...    25   7.2  
AC024839-9|AAY86283.1|   89|Caenorhabditis elegans Hypothetical ...    25   7.2  
AC024839-6|AAY86284.1|   89|Caenorhabditis elegans Hypothetical ...    25   7.2  
Z83125-12|CAB05627.1|  302|Caenorhabditis elegans Hypothetical p...    25   9.5  
Z81147-13|CAB03540.1|  302|Caenorhabditis elegans Hypothetical p...    25   9.5  

>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
           protein 40 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 86  LNAIPFTMVNYNNFVYFCISNSK**LEPRSIWIKNDKIVAN 208
           L AI  T+       + C+ NSK    P ++W+ ND+ + N
Sbjct: 152 LQAIDRTLAKGQPTAFHCLINSK--PTPTAVWLHNDEPIVN 190


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 86  LNAIPFTMVNYNNFVYFCISNSK**LEPRSIWIKNDKIVAN 208
           L AI  T+       + C+ NSK    P ++W+ ND+ + N
Sbjct: 152 LQAIDRTLAKGQPTAFHCLINSK--PTPTAVWLHNDEPIVN 190


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 7/24 (29%), Positives = 18/24 (75%)
 Frame = +2

Query: 62  YLLFKLVILNAIPFTMVNYNNFVY 133
           +++   V++ +IPF+++NYN+  +
Sbjct: 159 FIIISAVVIISIPFSLLNYNDIQF 182


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 56  YCYLLFKLVILNAIPFTMVNYNNFVYF 136
           +C +++ ++ +N  P  MVNYN+F+ +
Sbjct: 59  FCNIVYTILSMN-FPEFMVNYNSFIVY 84


>U80439-9|AAO38675.1|  661|Caenorhabditis elegans Hypothetical
           protein C01G8.9b protein.
          Length = 661

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 46  HLSVLLSVI*ISDIECYSIYDG 111
           H+SV L+++ + D   Y IYDG
Sbjct: 266 HMSVSLNLVDLPDAIAYPIYDG 287


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
            C01G8.9a protein.
          Length = 1724

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 46   HLSVLLSVI*ISDIECYSIYDG 111
            H+SV L+++ + D   Y IYDG
Sbjct: 1329 HMSVSLNLVDLPDAIAYPIYDG 1350


>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
           protein C44B9.4 protein.
          Length = 1150

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 112 NHRKWNSIQYH 80
           NHR W +I+YH
Sbjct: 132 NHRNWEAIEYH 142


>U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical
           protein C30B5.5 protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   FGTRIYSELFRQYHLSVLLSVI*ISDIECYSIYDG 111
           F  +IY  LF    + +L++++ +  I    +YDG
Sbjct: 500 FSIKIYLSLFNAQKMKILVNILILIRITSGMLYDG 534


>AL110479-28|CAJ76967.1|  213|Caenorhabditis elegans Hypothetical
           protein Y105C5B.6b protein.
          Length = 213

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 11  ARGFIQNYSDNII*AYCYLLFKL 79
           A GF+      +I AYCYL+F L
Sbjct: 79  AGGFLATVCIYLIIAYCYLIFML 101


>AL110479-27|CAB60322.2|  333|Caenorhabditis elegans Hypothetical
           protein Y105C5B.6a protein.
          Length = 333

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 11  ARGFIQNYSDNII*AYCYLLFKL 79
           A GF+      +I AYCYL+F L
Sbjct: 199 AGGFLATVCIYLIIAYCYLIFML 221


>AC024839-9|AAY86283.1|   89|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.10 protein.
          Length = 89

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  LLFKLVILNAIPFTMVNYNNFVYFCISN 148
           L+  +V LNA+ +  V    F+YFC+ +
Sbjct: 5   LVVVVVYLNALGYYAVLAYKFIYFCVQH 32


>AC024839-6|AAY86284.1|   89|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.9 protein.
          Length = 89

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 65  LLFKLVILNAIPFTMVNYNNFVYFCISN 148
           L+  +V LNA+ +  V    F+YFC+ +
Sbjct: 5   LVVVVVYLNALGYYAVLAYKFIYFCVQH 32


>Z83125-12|CAB05627.1|  302|Caenorhabditis elegans Hypothetical
           protein T15D6.1 protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 32  YSDNII*AYCYLLFKLVILNAIPFTMVNYNNFVYF 136
           Y  N+I  + YL+F       IPFT   Y+   +F
Sbjct: 262 YIQNLIYFFDYLVFPFTKDFKIPFTTTQYHRINHF 296


>Z81147-13|CAB03540.1|  302|Caenorhabditis elegans Hypothetical
           protein T15D6.1 protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 32  YSDNII*AYCYLLFKLVILNAIPFTMVNYNNFVYF 136
           Y  N+I  + YL+F       IPFT   Y+   +F
Sbjct: 262 YIQNLIYFFDYLVFPFTKDFKIPFTTTQYHRINHF 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,892,488
Number of Sequences: 27780
Number of extensions: 78359
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)