Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_L03
(234 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 0.77
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 24 2.3
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 23 5.4
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 23 7.1
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 23 7.1
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 23 7.1
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 22 9.4
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 22 9.4
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 22 9.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 22 9.4
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 22 9.4
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 22 9.4
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 0.77
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 116 KYRY*SSRP--NYIYHNFYLVFGIDFIVPSNFLHFF 15
KY RP +Y + +F+L G+DF V + + H F
Sbjct: 784 KYDVIQERPKISYDWFDFFLRCGVDFTVCNRYTHNF 819
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 24.2 bits (50), Expect = 2.3
Identities = 6/14 (42%), Positives = 13/14 (92%)
Frame = -2
Query: 83 IYHNFYLVFGIDFI 42
+++N +++FGIDF+
Sbjct: 106 VFYNLHMLFGIDFV 119
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 227 LFWFQKLYIPQLVNHT 180
L W++K Y+ +L+N T
Sbjct: 931 LRWYKKFYLGELINKT 946
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 207 VHPAISQSHIKFVGTSLSVVNHRTYILRNV 118
V+PAI + K +GT L V + Y ++V
Sbjct: 705 VNPAIQKKGYKLLGTLLRVDYGKAYATQHV 734
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 81 NIIRTRRLIPIFI 119
N++RTR LIP F+
Sbjct: 340 NVLRTRELIPEFL 352
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/41 (21%), Positives = 19/41 (46%)
Frame = -2
Query: 137 LIFLETYKYRY*SSRPNYIYHNFYLVFGIDFIVPSNFLHFF 15
++F Y Y+ + ++ N +VF FI + + +F
Sbjct: 420 ILFRNLYNYKELLAFAPFVVQNIIIVFSSSFIEEEHVIWYF 460
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 99 RLIPIFIRF*EYKFCGLLLKE 161
R++ IFIR FCG+L K+
Sbjct: 433 RILGIFIRDVMSDFCGVLKKQ 453
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Frame = +2
Query: 92 DAKINTYIYTFLRI*VLWFTTEREVPTNLMC 184
D+ + Y+Y +++ W P NL+C
Sbjct: 73 DSILEYYLYISVKVRKAWIAGYGSQPQNLIC 103
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 146 TTELIFLETYKYRY*SSRPNYIYHN-FYLVF 57
T E I E ++Y+ + P +I HN +L+F
Sbjct: 30 TLEHIKNELFRYKLRNEEPPFILHNKNFLIF 60
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 229 YYSGFKNCTSRN*SITH*VCRYLSFSS 149
YY G K ITH + +LSF S
Sbjct: 74 YYKGDKRLVLSKVLITHIISAFLSFLS 100
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 53 YRRLNRNYDKYN 88
YR LNR+ +KYN
Sbjct: 288 YRTLNRDINKYN 299
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 113 IYTFLRI*VLWFTT 154
+YTFL + V+W +T
Sbjct: 94 VYTFLEVYVIWSST 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,561
Number of Sequences: 5004
Number of extensions: 14610
Number of successful extensions: 28
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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