Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_L02
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   0.23 
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    19   6.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    19   6.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          19   6.7  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 0.23
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 12  GWNLVNYSLRIFLRATYLT 68
           G  +VNYS+ IFL A +++
Sbjct: 566 GATIVNYSIMIFLSAVFIS 584


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 130 SNHCNRTDHNSDIIGNSRI 186
           +NHCNR       I N+ I
Sbjct: 62  NNHCNRCTSRQIGIANTLI 80


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 106 RNHRRKTWSNHCNRTDHNSDIIGNSRIQKHR 198
           R+   K  S+  N+T HN++   N+    ++
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYNNNNYNNYK 105


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 73  GKAQRAVLKTRRNHRRKTWSNHCNRTDHNSD 165
           G   R+  +T   H R   S H +R  + +D
Sbjct: 218 GSRSRSFQRTSSCHSRYEDSRHEDRNSYRND 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,520
Number of Sequences: 438
Number of extensions: 1095
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)