Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K24
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 213 5e-56
03_01_0547 + 4093196-4093657,4094267-4095148 213 5e-56
03_01_0544 + 4082528-4082989,4083585-4084466 213 5e-56
03_01_0543 + 4076981-4077442,4078145-4079026 213 5e-56
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 58 3e-09
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 54 4e-08
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 54 4e-08
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 51 4e-07
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 40 8e-04
02_04_0462 + 23131433-23132836 31 0.51
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 29 1.5
10_08_1038 - 22485394-22485960,22486712-22487197 28 2.7
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 28 2.7
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 28 3.6
11_06_0596 + 25385744-25388890 27 4.7
11_04_0242 - 15273774-15274043,15274131-15274235 27 4.7
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 27 4.7
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 27 4.7
03_05_0896 - 28592658-28593331,28594069-28595455 27 4.7
11_03_0079 + 9669666-9669728,9670779-9672545 27 6.2
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 27 6.2
03_03_0035 + 13977150-13979228,13979351-13979824 27 6.2
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953 27 6.2
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 27 8.2
08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420 27 8.2
02_05_0254 - 27177167-27177393,27177476-27177725,27177818-271780... 27 8.2
02_01_0202 + 1366149-1366594,1368444-1368444,1368616-1368743,136... 27 8.2
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 213 bits (520), Expect = 5e-56
Identities = 94/137 (68%), Positives = 117/137 (85%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 186
GDNVGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 187 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 366
T+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 367 AVRGMRQTVAVGVIKAV 417
AVR MRQTVAVGVIK V
Sbjct: 413 AVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 213 bits (520), Expect = 5e-56
Identities = 94/137 (68%), Positives = 117/137 (85%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 186
GDNVGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 187 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 366
T+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 367 AVRGMRQTVAVGVIKAV 417
AVR MRQTVAVGVIK V
Sbjct: 413 AVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 213 bits (520), Expect = 5e-56
Identities = 94/137 (68%), Positives = 117/137 (85%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 186
GDNVGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 187 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 366
T+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 367 AVRGMRQTVAVGVIKAV 417
AVR MRQTVAVGVIK V
Sbjct: 413 AVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 213 bits (520), Expect = 5e-56
Identities = 94/137 (68%), Positives = 117/137 (85%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 186
GDNVGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 187 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 366
T+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 367 AVRGMRQTVAVGVIKAV 417
AVR MRQTVAVGVIK V
Sbjct: 413 AVRDMRQTVAVGVIKNV 429
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 58.0 bits (134), Expect = 3e-09
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Frame = +1
Query: 10 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN--HPGQISNGYTPVLDC 183
+NV + + +++ G+V S NP +F AQ+ +L + GY VL
Sbjct: 286 ENVRVKLSGIEDEDIMAGFVLS-SIGNPVGAVTEFNAQLQILELLDNAIFTAGYKAVLHI 344
Query: 184 HTAHIACKFAEIKEKVDRRTGKSTEDNPKS-------IKSGDAAIVNLVPSKPLCVESFQ 342
H+ C+ ++ E++D + K + K +K+G + + + +C+E+F
Sbjct: 345 HSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFS 404
Query: 343 EFPPLGRFAVR 375
+FP LGRF +R
Sbjct: 405 DFPQLGRFTLR 415
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 54.4 bits (125), Expect = 4e-08
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNP--PRGAADFTA-QVIVLNHPGQISNGYTPVL 177
GDNV +++ + +L + G NP P ++F +V+VL+ I GY
Sbjct: 540 GDNVAVSLQGIDGSKL----ILGGILCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEF 595
Query: 178 DCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 357
H A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + L
Sbjct: 596 HIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRAL 654
Query: 358 GRFAVRGMRQTVAVGVI 408
GR +R T+AVGV+
Sbjct: 655 GRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 54.4 bits (125), Expect = 4e-08
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNP--PRGAADFTA-QVIVLNHPGQISNGYTPVL 177
GDNV +++ + +L + G NP P ++F +V+VL+ I GY
Sbjct: 540 GDNVAVSLQGIDGSKL----ILGGILCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEF 595
Query: 178 DCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 357
H A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + L
Sbjct: 596 HIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRAL 654
Query: 358 GRFAVRGMRQTVAVGVI 408
GR +R T+AVGV+
Sbjct: 655 GRAFLRSSGSTIAVGVV 671
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 50.8 bits (116), Expect = 4e-07
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +1
Query: 196 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 375
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 376 GMRQTVAVGVIKAV 417
T+AVG++ V
Sbjct: 637 SQGNTIAVGIVSRV 650
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 39.9 bits (89), Expect = 8e-04
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +1
Query: 1 ARGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN--HPGQISNGYTPV 174
A G+NV + + ++ G+V K NP ++F AQ+ +L + GY V
Sbjct: 238 APGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFRAQLQILELLDNAIFTAGYKAV 296
Query: 175 LDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIK 279
L H+ C+ E+ E++D + K + K K
Sbjct: 297 LHIHSVVEECEIVELIEEIDLKRRKEGDIKKKKSK 331
>02_04_0462 + 23131433-23132836
Length = 467
Score = 30.7 bits (66), Expect = 0.51
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 3/140 (2%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISN---GYTPVL 177
GDNVG ++ + ++ RG V + P D V+ + G+ S GY P
Sbjct: 340 GDNVGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKDEGGRHSPFFPGYRPQF 399
Query: 178 DCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 357
T + +I D + K GD + + +P+ E
Sbjct: 400 YMRTTDVTGNVTKIMNDKD--------EEAKMCMPGDRVKMVVELIQPVACEQGM----- 446
Query: 358 GRFAVRGMRQTVAVGVIKAV 417
RFA+R +TV GVI +
Sbjct: 447 -RFAIREGGKTVGAGVINTI 465
>04_04_0843 -
28619064-28619280,28619730-28619825,28620349-28620720,
28620849-28621161,28621183-28621393,28621478-28621681,
28622328-28622726
Length = 603
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Frame = +3
Query: 291 RHCQPGSLQAPVCGVLPG------VPTPRSFRRAWHE 383
RHC P +APVC V P VP P S + WH+
Sbjct: 102 RHC-PARGEAPVCLVPPPRGYRVPVPWPESLHKIWHD 137
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 117 SASHCAKS--PRSNIKRIHTCIGLPHSPHSL 203
S+S CA + P NI RIH IGL SP L
Sbjct: 96 SSSSCAAAAPPSPNILRIHAPIGLARSPAHL 126
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -1
Query: 290 ASPDLMDLGLSSVDLPVRRSTFSL 219
A+ DLM G+S V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 212 PKSKRKSTVVLVNQQRTTLNPLNLVMP 292
P+ R+S + Q TT++P NLV+P
Sbjct: 103 PRRNRRSPALRAAFQETTISPANLVLP 129
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 215 KSKRKSTVVLVNQQRTTLNPLNLVMPPLSTW 307
K+ K +N+ TTL L++ M P+S+W
Sbjct: 832 KANLKDLFAQINKLHTTLRSLSIRMKPVSSW 862
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 211 QICRLCGLCGNPIQVCI 161
QIC +C CG P VCI
Sbjct: 74 QICAVCTCCGGPHGVCI 90
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 55 RRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 165
RRG +++ PR +A + QV+ HP +S GY
Sbjct: 175 RRGSNCVENRRRKPRSSAQSSPQVVTPRHP--VSEGY 209
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 27.5 bits (58), Expect = 4.7
Identities = 33/137 (24%), Positives = 55/137 (40%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 186
GDNVG ++ + +++RG V K + F A++ VL +T L +
Sbjct: 331 GDNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKFEAEIYVLTK--DEGGRHTAFLSNY 386
Query: 187 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 366
+ + A++ KV D + + GD P+ +E P RF
Sbjct: 387 SPQFYFRTADVTGKV------VLPDGVEMVMPGDNVTAGFELISPVPLE------PGQRF 434
Query: 367 AVRGMRQTVAVGVIKAV 417
A+R +TV GV+ V
Sbjct: 435 ALREGGRTVGAGVVSKV 451
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 193 HIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 354
H+ + EIK+ +R G+ + ++++GD SKP E F P
Sbjct: 638 HVVLRIEEIKKSSERLEGRDPQQQASNLEAGDDQ-----TSKPESAEGLNPFAP 686
>11_03_0079 + 9669666-9669728,9670779-9672545
Length = 609
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 112 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 234
FTA+ +H Q++N VLDC AH+ CK+ + E ++
Sbjct: 572 FTAENRSKSH--QVNN-VLAVLDCLQAHMECKYDMLTESLE 609
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 217 IKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPS 315
IKE + R GKST D P +G I PS
Sbjct: 207 IKEAITTRGGKSTRDPPYPNPTGTNGIAREAPS 239
>03_03_0035 + 13977150-13979228,13979351-13979824
Length = 850
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 406 LHRRRPSASCHARRNDRGVGTPGRTP 329
L RP + +RRNDRG G GR P
Sbjct: 52 LFEPRPEETPVSRRNDRGGGGGGREP 77
>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
Length = 946
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 421 SSQPLLHRRRPSASCHARRNDRGVGTPGRT 332
SS ++H+ P S HAR+ G GRT
Sbjct: 886 SSLNMVHQLMPPTSLHARQRSAGESETGRT 915
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 315 GGNQVDNGGITRFNGF 268
GGN +DN G+T +N F
Sbjct: 379 GGNSMDNSGVTEYNLF 394
>08_01_0851 + 8383043-8383301,8384654-8384824,8384907-8386420
Length = 647
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 112 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 234
FTA+ +H Q++N +LDC AH+ CK+ + E ++
Sbjct: 610 FTAENRSKSH--QVNN-VLAILDCLQAHMECKYDMLTESLE 647
>02_05_0254 -
27177167-27177393,27177476-27177725,27177818-27178054,
27178138-27178296,27179454-27179527,27180929-27181172
Length = 396
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 347 NSWKDSTHRGLEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQA 198
N + RGL+GT A S L G S + + + F+ + N+ A
Sbjct: 133 NKTSNPLFRGLQGTNFASAGSGILDSTGQSIIPMSKQVQQFAAVQRNISA 182
>02_01_0202 +
1366149-1366594,1368444-1368444,1368616-1368743,
1368943-1369039
Length = 223
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 7 GDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 177
GD+ G V RR V GD + P + DF V++L H S+GY +L
Sbjct: 20 GDSGGGEAPAAEVLRRRRVPVPGDGLSPIPMFSVDFRLFVLILPH----SHGYLVLL 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,689,201
Number of Sequences: 37544
Number of extensions: 322556
Number of successful extensions: 976
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -