Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K23
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...   114   6e-27
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   3.4  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   3.4  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    24   7.9  

>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1010

 Score =  114 bits (274), Expect = 6e-27
 Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
 Frame = +3

Query: 15   FLRTELVDRLASMLNFNLQQLCGPKCKNLKVRRPEKYGWEPRRLLSQLVDIYLHL-DSPL 191
            F   E+VDRLA+MLN+NLQ LCGPKC NLKV  P KY +  + LLS + D+YL+L + P 
Sbjct: 810  FCAVEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLCNEPA 869

Query: 192  FHAALAADERSFRKELFDEAALRLAKSCIKTATEIELFKALADNAYQIAVSNQQKSDEYA 371
            F  A+A D RS+ KE+F+ A   + K  +K++ +IE  K   +      +    + ++  
Sbjct: 870  FVEAVAHDGRSYSKEIFERATSIMTKHNLKSSFDIEAIKEFVNRVEAFRLQEATEEEDMG 929

Query: 372  DAPDEFRHPLM 404
            D PD F  PLM
Sbjct: 930  DIPDYFLDPLM 940


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 33  VDRLASMLNFNLQQLCGPKCKNLKVRRPE 119
           ++R+ S+   +   +CGP C+N + +R E
Sbjct: 150 INRMTSIECTDEDNVCGPSCQNQRFQRHE 178


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 219 RSFRKELFDEAALRLAKSCIKTATE 293
           R    ++FDE AL L  SCI++  +
Sbjct: 513 RLVNSQVFDEIALELVHSCIRSLVD 537


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 249 LHRTILSGTISRLQRVRR 196
           LHR   SG +S L RVRR
Sbjct: 408 LHRNEFSGALSGLTRVRR 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,473
Number of Sequences: 5004
Number of extensions: 26330
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)