Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_K23
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931... 88 2e-18
12_02_0277 + 16682836-16684368 34 0.050
12_02_0275 + 16662206-16663738 34 0.050
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 29 1.1
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 29 1.9
07_03_0806 + 21654057-21655154,21655728-21655796,21656110-216562... 27 4.3
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801... 27 4.3
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312... 27 5.7
>03_04_0147 + 17690840-17691687,17692328-17692532,17693048-17693199,
17693306-17693597,17693807-17693962,17694561-17694764,
17694875-17694987,17695078-17695192,17695293-17695382,
17695463-17695666,17695764-17695859,17696094-17696216,
17696308-17696400,17696477-17696641,17697179-17697268,
17697356-17697520
Length = 1036
Score = 88.2 bits (209), Expect = 2e-18
Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Frame = +3
Query: 12 PFLRTELVDRLASMLNFNLQQLCGPKCKNLKVRRPEKYGWEPRRLLSQLVDIYLHL---- 179
PFL E+V+R+ASMLN+ L QL GP+ K+L V+ PEKY ++P++LL Q+ IY+H+
Sbjct: 819 PFLLPEMVERVASMLNYFLLQLAGPQRKSLTVKDPEKYEFKPKQLLKQIATIYVHITRGD 878
Query: 180 DSPLFHAALAADERSFRKELFDEAALRLAKSCIKTATEIELFKALADNAYQIAVSNQQKS 359
+F AA++ D RS+ ++LF AA L K I+ F LA + A
Sbjct: 879 KEGIFPAAISKDGRSYNEQLFASAANILWK-IGGDPQIIQEFMQLASKSKTAASEAMDAE 937
Query: 360 DEYADAPDEFRHPL 401
D PDEF P+
Sbjct: 938 AMLGDIPDEFLDPI 951
>12_02_0277 + 16682836-16684368
Length = 510
Score = 33.9 bits (74), Expect = 0.050
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +3
Query: 108 RRPEKYGWEPRRLLSQLVDIYLHLDSPLFHAALA--ADERSFRKELFDEAALRLAKSCIK 281
R PE E R ++S +V + + +P ++ +ER R ++FD + L +C+
Sbjct: 23 RMPEHVHEEARYIISSVVPMVMSYFNPYEQITVSEYGEERFRRNKMFDAVSTYLRSACLG 82
Query: 282 TATEI--ELFKALADNAYQIAVSNQQKSD 362
+AT++ +L + D+ I NQ+ D
Sbjct: 83 SATKLKAKLGNNIGDDPLVILDENQEVVD 111
>12_02_0275 + 16662206-16663738
Length = 510
Score = 33.9 bits (74), Expect = 0.050
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Frame = +3
Query: 108 RRPEKYGWEPRRLLSQLVDIYLHLDSPLFHAALA--ADERSFRKELFDEAALRLAKSCIK 281
R PE E R ++S +V + + +P ++ +ER R ++FD + L +C+
Sbjct: 23 RMPEHVHEEARYIISSVVPMVMSYFNPYEQITVSEYGEERFRRNKMFDAVSTYLRSACLG 82
Query: 282 TATEI--ELFKALADNAYQIAVSNQQKSD 362
+AT++ +L + D+ I NQ+ D
Sbjct: 83 SATKLKAKLGNNIGDDPLVILDENQEVVD 111
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +3
Query: 45 ASMLNFNLQQLCGPKCK-----NLKVRRPEKYGWEPRRLLSQ 155
A+++++ +Q C K N+ + RP+ YGW P L Q
Sbjct: 335 ATLMHYAVQTACSQTIKTLLLYNVDINRPDDYGWTPLHLAVQ 376
>04_04_1183 -
31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 297 ELFKALADNAYQIAVSNQQKSDEYADAPDEFRHP 398
ELFK L +NA ++ ++K DE + D+ +HP
Sbjct: 856 ELFKKLMENAGKMEEQMEEKQDE-SQRQDDIKHP 888
>07_03_0806 +
21654057-21655154,21655728-21655796,21656110-21656274,
21656416-21656589,21659506-21659769,21659957-21660070
Length = 627
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 234 ELFDEAALRLAKSCIKTATEIELFKALADNAYQIA 338
E +DE A LA C + ATEI + ++AD A Q+A
Sbjct: 154 EDYDEEANLLALPCFERATEIAI--SIADMAVQLA 186
>03_02_0386 +
8009884-8010133,8010274-8010338,8010545-8010658,
8010736-8010895,8010975-8011093,8011209-8011635,
8011834-8012057,8012863-8012973,8013056-8013188,
8013259-8013365,8013430-8013444,8013482-8013571,
8013855-8013917,8013973-8014053,8014136-8014208,
8014312-8014367,8014460-8014554,8014649-8014683,
8015449-8015525
Length = 764
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 246 EAALRLAKSCIKTATEIELFKALADNAY 329
E A A+ C+KT EIE ALA + Y
Sbjct: 336 EQAANSAEGCLKTYKEIETHTALAGSTY 363
>05_05_0315 -
24030695-24030787,24030896-24030995,24031120-24031247,
24031350-24031517,24031626-24031741,24031773-24031896,
24032085-24032254,24032255-24032999
Length = 547
Score = 27.1 bits (57), Expect = 5.7
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +3
Query: 180 DSPLFHAALAADERSFRKELFDEAALRLAKSCIKTATEI----ELFKAL-ADNAYQIAVS 344
D+PL +A L ++ F +AALR+ C+ + EI E+FK++ +DN+ I V
Sbjct: 359 DTPLDNAVLGRLKQFRAMNQFKKAALRVIAGCL-SEEEIRGLKEMFKSMDSDNSGTITVD 417
Query: 345 NQQK 356
+K
Sbjct: 418 ELRK 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,100,515
Number of Sequences: 37544
Number of extensions: 186741
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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