Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_K22
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    81   4e-17
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    30   0.062
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   0.43 
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   1.8  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   3.1  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   3.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   4.0  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   4.0  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    23   9.3  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    23   9.3  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    23   9.3  
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    23   9.3  

>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 80.6 bits (190), Expect = 4e-17
 Identities = 38/96 (39%), Positives = 56/96 (58%)
 Frame = +1

Query: 7   GSCKAFVDMLVAGGIRADGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQR 186
           G C    D L A  IR + D R  Y+PG+KF+HWE+KGVP+R+E GP D  K +V AV+R
Sbjct: 522 GFCSKLADRLNAADIRTEADLRA-YTPGYKFSHWEMKGVPLRLEYGPNDAKKNQVTAVRR 580

Query: 187 FAGEKMTLKRDAAVNDITALLERTHDQMFQKSTKER 294
              EK+ +  +     ++ LL +    M++ +  ER
Sbjct: 581 DTFEKIPVPLNNLEKGVSDLLAKIQTNMYETAKAER 616


>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 30.3 bits (65), Expect = 0.062
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 70  RDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEVVAVQRFAGEKMTLKRDA 222
           R N + G+K    EL G P  I +G +   +G    + R +GE+  L +D+
Sbjct: 365 RQNRAFGYKMRDAELIGYPFVIVVGSRFQEEGICEIIVRSSGERYKLDKDS 415


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +1

Query: 34  LVAGGIRADGDYRDNYSPGWKFNHWELKGVPVRIEIGPKDMAKGEV----VAVQRFAGEK 201
           L A GI+A+  Y+    P  +F+  +   VP  + +G  + AKG V    + ++  + E 
Sbjct: 460 LWANGIKAEFLYKVKPKPRQQFDAADKFDVPFAVILGQDEFAKGSVRIKQMGLKENSDEG 519

Query: 202 MTLKRDAAVNDITALLE 252
             + R+  V+ +  LL+
Sbjct: 520 QLVPREEMVSVLKKLLK 536


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 121 VPVRIEIGPKDMAKGEVVAVQRFAGEKMTLKRD-AAVNDI 237
           V VR    PK  +KG  VAV+    + + LK   + +ND+
Sbjct: 664 VNVRNRDDPKKQSKGSTVAVEEVVKKLLKLKESKSLINDL 703


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 161  RAKSSQCKGLRARK*R*NETRPSTTLPHY 247
            RA+ ++C GL ARK   +ET  S+    Y
Sbjct: 1208 RARLAECLGLDARKYYSHETSESSAFQRY 1236


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 RENDAKTRRGRQRHYRITREDTRPD 269
           R+   + +R RQ   RIT++D  PD
Sbjct: 650 RQKQLEKKRRRQELERITQQDATPD 674


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 209 SVIFSPANLCTATTSPFAISLGPISIRTGTPFNS 108
           S++ SP N      + FA S  P S    TPFNS
Sbjct: 294 SMLASPYNGYQNDAASFAHSKLPSSANPNTPFNS 327


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 79  YSPGWKFNHWELKGVPVRIEI 141
           + P WK N W  K   V++ I
Sbjct: 707 FKPSWKVNVWGFKSDKVKLNI 727


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 205 SFSRPQTFALRRLRPSPYP*DRSRYG 128
           S S P     R    SPYP DR+  G
Sbjct: 113 SLSEPSYVMARTPSSSPYPHDRAEVG 138


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 234 HYRITREDTRPDVSEVNKRT 293
           H RI R    P VSE NKRT
Sbjct: 166 HRRINRFAGLPAVSEHNKRT 185


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 151 P*DRSRYGPEHPSTPND*ISSPVNSCPCN 65
           P D SRY   H +   D IS  +N  P N
Sbjct: 286 PSDNSRYLSFHQNITKDSISRLLNGLPLN 314


>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 182 CTATTSPFAISLGPISIRTGTPFNSQ*LNFQP 87
           C+   +PF + +GP +     P  +  LN  P
Sbjct: 38  CSQCNTPFCVDVGPRNAIIQLPNGADVLNLNP 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,658
Number of Sequences: 5004
Number of extensions: 17494
Number of successful extensions: 59
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)